Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF247

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
19,466	-		GFF245	0.64	+0.3
19,487	+		GFF245	0.67	+0.6
19,488	-		GFF245	0.67	-0.3
19,488	-		GFF245	0.67	-0.1
19,488	-		GFF245	0.67	-0.4
19,691	-		GFF245	0.90	-0.4
19,805	+				+0.0
19,806	-				-0.4
19,836	+				+0.2
19,836	+				-0.2
19,838	+				+2.1
19,838	+				-0.6
19,838	+				+0.7
19,839	-				-0.8
19,862	+				-1.9
19,862	+				+0.0
19,883	-		GFF246	0.12	+0.8
20,017	+		GFF246	0.41	-0.0
20,117	-		GFF246	0.62	+0.3
20,382	-				+0.4
20,397	+				-0.1
20,433	+				-0.5
20,511	+				+0.1
20,511	+				-0.6
20,525	+				+0.3
20,557	+		GFF247	0.11	+0.2
20,584	+		GFF247	0.15	-0.0
20,584	+		GFF247	0.15	+0.7
20,585	-		GFF247	0.15	-0.3
20,597	+		GFF247	0.16	-0.4
20,606	+		GFF247	0.17	+2.3
20,614	-		GFF247	0.18	+0.0
20,619	+		GFF247	0.19	+0.7
20,631	+		GFF247	0.20	-0.1
20,632	-		GFF247	0.20	+0.1
20,641	-		GFF247	0.21	+0.7
20,674	+		GFF247	0.25	+0.4
20,675	-		GFF247	0.25	+0.7
20,678	+		GFF247	0.25	+0.2
20,679	-		GFF247	0.26	+0.1
20,705	+		GFF247	0.29	+0.4
20,759	-		GFF247	0.35	+0.0
20,791	-		GFF247	0.38	-0.3
20,791	-		GFF247	0.38	-0.4
20,793	-		GFF247	0.39	+1.0
20,793	-		GFF247	0.39	+0.4
20,826	-		GFF247	0.42	-0.4
20,826	-		GFF247	0.42	-0.7
20,826	-		GFF247	0.42	+0.1
20,857	-		GFF247	0.46	+0.3
20,924	-		GFF247	0.54	-0.4
20,935	-		GFF247	0.55	+0.2
20,991	+		GFF247	0.61	-0.1
20,991	+		GFF247	0.61	-0.2
20,991	+		GFF247	0.61	-0.1
20,992	-		GFF247	0.61	+0.1
21,028	+		GFF247	0.66	+0.1
21,046	-		GFF247	0.68	-0.4
21,087	+		GFF247	0.72	-0.1
21,090	-		GFF247	0.73	+0.3
21,157	-		GFF247	0.80	-0.5
21,196	+		GFF247	0.85	-0.0
21,197	-		GFF247	0.85	+0.6
21,228	+		GFF247	0.89	-0.1
21,229	-		GFF247	0.89	-0.4
21,229	-		GFF247	0.89	+0.4
21,318	-				+0.3
21,318	-				-0.1
21,318	-				-0.1
21,406	+				-0.1
21,509	-				-0.3
21,579	-		GFF248	0.10	+0.4
21,768	-		GFF248	0.20	-0.1
21,770	-		GFF248	0.20	+0.2
21,983	-		GFF248	0.32	+0.1
21,986	-		GFF248	0.32	-1.4
22,024	+		GFF248	0.34	-0.2
22,052	+		GFF248	0.36	-0.7
22,097	+		GFF248	0.38	+0.4
22,133	+		GFF248	0.40	-0.4
22,134	-		GFF248	0.40	-0.0
22,309	-		GFF248	0.50	+0.0
22,318	+		GFF248	0.50	+0.2
22,319	-		GFF248	0.50	-0.3