Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2420

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
33,048	+		GFF2419	0.69	+0.4
33,056	-		GFF2419	0.70	+0.1
33,157	+		GFF2419	0.74	+0.5
33,158	-		GFF2419	0.74	+0.5
33,158	-		GFF2419	0.74	-0.3
33,158	-		GFF2419	0.74	+0.2
33,298	-		GFF2419	0.80	-0.1
33,427	+		GFF2419	0.85	+0.0
33,427	+		GFF2419	0.85	+0.2
34,365	+		GFF2420	0.19	+0.3
34,563	+		GFF2420	0.27	+0.3
34,656	+		GFF2420	0.31	+1.7
34,659	-		GFF2420	0.31	-0.7
34,700	+		GFF2420	0.33	-0.2
34,817	-		GFF2420	0.38	-0.7
34,892	+		GFF2420	0.41	+0.0
34,973	+		GFF2420	0.45	-0.2
34,973	+		GFF2420	0.45	+2.5
34,975	+		GFF2420	0.45	+0.2
35,155	+		GFF2420	0.53	-0.4
35,159	-		GFF2420	0.53	+0.0
35,281	-		GFF2420	0.58	+0.6
35,317	-		GFF2420	0.60	+0.6
35,317	-		GFF2420	0.60	+0.8
35,587	-		GFF2420	0.72	-0.1
35,709	-		GFF2420	0.77	+0.6
35,738	-		GFF2420	0.78	-1.0
35,886	+		GFF2420	0.84	-0.3
36,229	-				-0.0
36,248	+				-0.8
36,249	-				+0.3
36,305	+				+0.1
36,306	-				+0.6
36,339	-				+0.2
36,440	+				+0.3
36,441	-				-0.2
37,045	-		GFF2421	0.16	+1.3
37,204	-		GFF2421	0.19	+0.3