Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2418

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
29,811	+		GFF2416	0.82	+0.4
29,812	-		GFF2416	0.82	+0.7
29,825	+		GFF2416	0.83	-0.1
29,977	+				+0.4
29,980	+				-0.5
29,981	-				+0.7
29,981	-				+0.2
29,991	+				-1.7
30,001	+				-0.1
30,117	+		GFF2417	0.18	+1.8
30,190	+		GFF2417	0.27	+0.4
30,358	+		GFF2417	0.48	+0.1
30,388	+		GFF2417	0.52	+0.3
30,389	-		GFF2417	0.52	+1.2
30,390	+		GFF2417	0.52	-0.3
30,390	+		GFF2417	0.52	-0.2
30,410	+		GFF2417	0.54	+0.2
30,510	+		GFF2417	0.67	+0.1
30,563	+		GFF2417	0.73	+0.6
30,563	+		GFF2417	0.73	+0.2
30,563	+		GFF2417	0.73	+0.1
30,693	+		GFF2417	0.89	+1.0
30,768	-				+0.4
30,992	+		GFF2418	0.35	+0.3
31,055	-		GFF2418	0.45	+0.4
31,405	+				+0.1
31,406	-				-1.0
31,406	-				+0.3
31,607	-				-0.3
31,633	+				-0.2
31,918	+		GFF2419	0.22	-0.6
31,937	-		GFF2419	0.23	-0.2
32,091	-		GFF2419	0.29	+0.6
32,121	+		GFF2419	0.30	-0.9
32,176	-		GFF2419	0.33	+0.2
32,219	-		GFF2419	0.35	-0.5
32,240	+		GFF2419	0.35	-1.1
32,241	-		GFF2419	0.35	-0.2
32,241	-		GFF2419	0.35	+0.1
32,250	+		GFF2419	0.36	+0.2
32,251	-		GFF2419	0.36	-0.3
32,318	+		GFF2419	0.39	+0.6
32,362	-		GFF2419	0.41	+0.5
32,395	+		GFF2419	0.42	+1.0
32,395	+		GFF2419	0.42	+0.5