Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2326
Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Acanthamoeba sp., muxed culture-2 |
---|---|---|---|---|---|
remove | |||||
112,234 | - | -0.2 | |||
112,310 | - | +0.9 | |||
112,310 | - | +0.5 | |||
112,315 | + | -0.1 | |||
112,316 | - | +0.1 | |||
112,317 | + | +0.1 | |||
112,318 | - | -0.7 | |||
112,405 | - | +0.1 | |||
112,457 | + | GFF2325 | 0.13 | +1.0 | |
112,457 | + | GFF2325 | 0.13 | +0.8 | |
112,457 | + | GFF2325 | 0.13 | +0.4 | |
112,458 | - | GFF2325 | 0.13 | +0.3 | |
112,557 | + | GFF2325 | 0.24 | +1.3 | |
112,582 | - | GFF2325 | 0.27 | -0.9 | |
112,591 | + | GFF2325 | 0.28 | -1.9 | |
112,591 | + | GFF2325 | 0.28 | -0.1 | |
112,798 | + | GFF2325 | 0.52 | +0.2 | |
112,933 | + | GFF2325 | 0.68 | +0.1 | |
112,934 | - | GFF2325 | 0.68 | -0.7 | |
113,075 | - | GFF2325 | 0.85 | +0.1 | |
113,246 | + | +0.7 | |||
113,247 | - | +0.3 | |||
113,328 | + | GFF2326 | 0.12 | -0.1 | |
113,395 | - | GFF2326 | 0.19 | +0.5 | |
113,395 | - | GFF2326 | 0.19 | -0.2 | |
113,984 | + | GFF2326 | 0.78 | +0.6 | |
114,044 | + | GFF2326 | 0.84 | -0.1 | |
114,603 | + | GFF2327 | 0.14 | -0.3 | |
114,798 | - | GFF2327 | 0.32 | -1.7 | |
114,909 | + | GFF2327 | 0.42 | -0.3 | |
114,909 | + | GFF2327 | 0.42 | +0.3 | |
114,910 | - | GFF2327 | 0.42 | -0.1 | |
115,013 | + | GFF2327 | 0.51 | -0.6 | |
115,016 | + | GFF2327 | 0.51 | -0.4 | |
115,199 | + | GFF2327 | 0.67 | -0.2 |
Or see this region's nucleotide sequence