Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2199

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2199 and GFF2200 are separated by 302 nucleotides GFF2199 - FIG01045596: hypothetical protein, at 156 to 314 GFF2199 GFF2200 - Phage CI-like repressor, at 617 to 823 GFF2200 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1 2at 0.153 kb on + strandat 0.154 kb on - strandat 0.181 kb on + strand, within GFF2199at 0.181 kb on + strand, within GFF2199at 0.206 kb on - strand, within GFF2199at 0.261 kb on + strand, within GFF2199at 0.295 kb on + strand, within GFF2199at 0.341 kb on + strandat 0.580 kb on + strandat 0.692 kb on - strand, within GFF2200at 0.692 kb on - strand, within GFF2200at 0.958 kb on + strandat 0.958 kb on + strandat 0.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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153 + +1.7
154 - +1.1
181 + GFF2199 0.16 +0.2
181 + GFF2199 0.16 +1.0
206 - GFF2199 0.31 +0.5
261 + GFF2199 0.66 +1.8
295 + GFF2199 0.87 +1.3
341 + -0.7
580 + -0.1
692 - GFF2200 0.36 -0.7
692 - GFF2200 0.36 -0.6
958 + -0.9
958 + -0.5
959 - -0.1

Or see this region's nucleotide sequence