Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2120

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
6,405	+		GFF2119	0.27	+0.1
6,896	-				-0.5
6,909	-				-0.4
7,054	-				+0.2
7,080	+				-0.0
7,198	+		GFF2120	0.14	-0.3
7,213	+		GFF2120	0.15	-1.5
7,434	+		GFF2120	0.26	-0.2
7,435	-		GFF2120	0.26	-0.1
7,603	-		GFF2120	0.34	-0.8
7,607	+		GFF2120	0.34	+0.3
7,608	-		GFF2120	0.34	+0.4
7,771	+		GFF2120	0.42	-0.0
7,771	+		GFF2120	0.42	-0.0
7,881	-		GFF2120	0.47	+0.1
7,881	-		GFF2120	0.47	+0.6
7,894	-		GFF2120	0.48	+1.7
8,066	-		GFF2120	0.56	-0.2
8,202	-		GFF2120	0.62	-0.7
8,267	+		GFF2120	0.65	+0.0
8,293	-		GFF2120	0.67	-1.0
8,312	+		GFF2120	0.68	+0.1
8,322	-		GFF2120	0.68	-0.3
8,442	-		GFF2120	0.74	-0.7
8,445	+		GFF2120	0.74	-2.0
8,552	+		GFF2120	0.79	+0.0
8,626	+		GFF2120	0.82	-0.3
8,626	+		GFF2120	0.82	+0.4
8,626	+		GFF2120	0.82	+1.4
8,868	+				-0.6
8,869	-				+1.1
8,916	+				-0.9
8,916	+				-0.4
8,927	-				+0.0
9,057	-				+0.3
9,117	+				-1.7
9,299	+				+0.3
9,303	+				-0.3
9,303	+				-0.1
9,303	+				+0.5
9,304	-				-0.9
9,348	+				+0.3
9,349	-				+0.0
9,350	+				-0.5
9,653	-		GFF2122	0.30	-1.1
9,702	-		GFF2122	0.35	+0.4
9,716	+		GFF2122	0.37	+0.3
9,717	-		GFF2122	0.37	-0.8
9,767	+		GFF2122	0.42	-0.2
9,897	-		GFF2122	0.57	+0.3
9,900	+		GFF2122	0.58	-0.3
9,900	+		GFF2122	0.58	-0.0
9,936	+		GFF2122	0.62	+0.6
9,937	-		GFF2122	0.62	-0.7
9,937	-		GFF2122	0.62	+0.2
9,941	+		GFF2122	0.62	+0.6
9,941	+		GFF2122	0.62	-0.1