Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2073 and GFF2074 are separated by 11 nucleotides GFF2074 and GFF2075 overlap by 4 nucleotides
GFF2073 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 35,270 to 36,631
GFF2073
GFF2074 - Ethanolamine utilization protein EutA, at 36,643 to 38,046
GFF2074
GFF2075 - Ethanolamine permease, at 38,043 to 39,269
GFF2075
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -2
-1
0
1 at 35.701 kb on + strand, within GFF2073 at 35.701 kb on + strand, within GFF2073 at 35.702 kb on - strand, within GFF2073 at 35.778 kb on + strand, within GFF2073 at 35.779 kb on - strand, within GFF2073 at 36.115 kb on + strand, within GFF2073 at 36.122 kb on + strand, within GFF2073 at 36.336 kb on + strand, within GFF2073 at 36.590 kb on - strand at 36.719 kb on + strand at 36.720 kb on - strand at 36.720 kb on - strand at 36.720 kb on - strand at 36.773 kb on - strand at 36.787 kb on + strand, within GFF2074 at 36.788 kb on - strand, within GFF2074 at 36.788 kb on - strand, within GFF2074 at 37.069 kb on - strand, within GFF2074 at 37.072 kb on - strand, within GFF2074 at 37.092 kb on + strand, within GFF2074 at 37.242 kb on - strand, within GFF2074 at 37.285 kb on - strand, within GFF2074 at 37.285 kb on - strand, within GFF2074 at 37.569 kb on - strand, within GFF2074 at 37.777 kb on - strand, within GFF2074 at 37.908 kb on + strand at 37.909 kb on - strand at 38.193 kb on + strand, within GFF2075 at 38.291 kb on + strand, within GFF2075 at 38.292 kb on - strand, within GFF2075 at 38.391 kb on + strand, within GFF2075 at 38.490 kb on - strand, within GFF2075 at 38.893 kb on - strand, within GFF2075 at 38.905 kb on + strand, within GFF2075 at 38.905 kb on + strand, within GFF2075 at 39.022 kb on - strand, within GFF2075
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 35,701 + GFF2073 0.32 -0.0 35,701 + GFF2073 0.32 +0.4 35,702 - GFF2073 0.32 -0.3 35,778 + GFF2073 0.37 -0.6 35,779 - GFF2073 0.37 +0.1 36,115 + GFF2073 0.62 -0.5 36,122 + GFF2073 0.63 -0.9 36,336 + GFF2073 0.78 +0.0 36,590 - -0.1 36,719 + +0.4 36,720 - -0.6 36,720 - +0.2 36,720 - +0.3 36,773 - -0.5 36,787 + GFF2074 0.10 -1.8 36,788 - GFF2074 0.10 -2.1 36,788 - GFF2074 0.10 -0.3 37,069 - GFF2074 0.30 -0.2 37,072 - GFF2074 0.31 -1.5 37,092 + GFF2074 0.32 -0.2 37,242 - GFF2074 0.43 -0.2 37,285 - GFF2074 0.46 +0.2 37,285 - GFF2074 0.46 -0.2 37,569 - GFF2074 0.66 -0.9 37,777 - GFF2074 0.81 -0.4 37,908 + -0.2 37,909 - +0.5 38,193 + GFF2075 0.12 +0.2 38,291 + GFF2075 0.20 -0.1 38,292 - GFF2075 0.20 -0.4 38,391 + GFF2075 0.28 +0.7 38,490 - GFF2075 0.36 +0.0 38,893 - GFF2075 0.69 +0.4 38,905 + GFF2075 0.70 +0.7 38,905 + GFF2075 0.70 +0.9 39,022 - GFF2075 0.80 -0.1
Or see this region's nucleotide sequence