Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1996

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
10,011	-		GFF1995	0.62	-1.1
10,416	+				-0.1
10,504	-				+0.1
10,594	+				-0.5
10,595	-				-0.3
10,595	-				-0.2
10,608	+				-0.2
10,680	+				+0.3
10,681	-				-0.1
10,685	+				-1.3
10,686	-				-0.6
10,733	+				-2.0
10,733	+				+1.3
10,733	+				-0.3
10,895	-		GFF1996	0.11	-0.2
11,106	+		GFF1996	0.23	+0.3
11,115	+		GFF1996	0.23	-0.3
11,116	-		GFF1996	0.23	-0.4
11,182	-		GFF1996	0.27	-0.3
11,305	+		GFF1996	0.34	-0.2
11,472	+		GFF1996	0.43	+0.3
11,548	-		GFF1996	0.47	+0.6
11,716	+		GFF1996	0.57	+1.4
11,770	+		GFF1996	0.60	-0.7
11,771	-		GFF1996	0.60	-0.2
11,771	-		GFF1996	0.60	+0.1
12,100	+		GFF1996	0.78	+0.5
12,100	+		GFF1996	0.78	-1.6
12,136	-		GFF1996	0.80	-0.7
12,170	+		GFF1996	0.82	+0.8
12,171	-		GFF1996	0.82	-0.1
12,214	+		GFF1996	0.84	+0.5
12,214	+		GFF1996	0.84	-0.7
12,215	-		GFF1996	0.84	-0.6
12,217	-		GFF1996	0.85	-0.2
12,255	+		GFF1996	0.87	-1.0
12,255	+		GFF1996	0.87	-0.2
12,469	-				+0.9
12,611	+		GFF1997	0.17	+0.1
12,611	+		GFF1997	0.17	+0.4
12,738	-		GFF1997	0.34	+0.4
12,842	+		GFF1997	0.49	-1.3
12,842	+		GFF1997	0.49	-0.2
12,847	+		GFF1997	0.49	-0.6
12,847	+		GFF1997	0.49	-0.2
12,951	-		GFF1997	0.63	+0.2
13,238	+				-0.5
13,251	+				-0.1
13,251	+				-0.0
13,252	-				-0.9
13,252	-				+0.7
13,305	+		GFF1998	0.19	-0.6
13,306	-		GFF1998	0.19	-0.1
13,307	+		GFF1998	0.19	-0.7
13,308	-		GFF1998	0.20	-0.3