Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1994

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
6,807	-		GFF1992	0.87	+0.3
6,816	-		GFF1992	0.87	-0.0
6,892	+		GFF1992	0.89	-0.7
7,043	+				+0.3
7,044	-				-0.5
7,044	-				+0.1
7,070	+				-0.2
7,070	+				+0.1
7,071	-				-0.2
7,134	-				+0.0
7,134	-				-0.2
7,134	-				-1.4
7,134	-				+0.6
7,178	+				+0.1
7,281	+				-2.0
7,282	-				-0.4
7,299	+				+2.2
7,304	+				+0.1
7,324	+				+0.2
7,359	+		GFF1993	0.16	-0.0
7,396	-		GFF1993	0.28	-0.1
7,396	-		GFF1993	0.28	+0.0
7,405	+		GFF1993	0.31	-0.2
7,625	+				-0.0
7,640	+				+0.0
7,654	+				+0.0
7,717	+				+1.0
7,726	+				+0.0
7,823	+				-0.4
8,219	+		GFF1994	0.36	-0.7
8,326	+		GFF1994	0.43	-0.7
8,326	+		GFF1994	0.43	+0.8
8,340	+		GFF1994	0.44	+0.0
8,346	-		GFF1994	0.45	-0.2
8,357	+		GFF1994	0.45	-0.1
8,358	-		GFF1994	0.46	+1.0
8,361	+		GFF1994	0.46	-0.1
8,362	-		GFF1994	0.46	+0.3
8,843	+		GFF1994	0.78	+0.8
8,877	+		GFF1994	0.80	+0.2
8,894	-		GFF1994	0.81	-1.3
8,909	+		GFF1994	0.82	+0.1
8,910	-		GFF1994	0.82	+0.2
8,948	+		GFF1994	0.85	+0.7
8,962	+		GFF1994	0.86	+0.3
8,963	-		GFF1994	0.86	+0.4
9,048	+				+0.1
9,311	-				+0.2
9,662	-		GFF1995	0.27	+1.7
10,011	-		GFF1995	0.62	-1.1