Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1955

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
145,917	-		GFF1954	0.66	-0.8
145,959	+		GFF1954	0.68	-0.6
145,991	+		GFF1954	0.70	-1.1
146,246	+		GFF1954	0.82	-0.2
146,247	-		GFF1954	0.82	-0.0
146,421	+		GFF1954	0.90	+0.2
146,433	-				-0.9
146,454	-				+0.2
146,785	-		GFF1955	0.11	+0.3
146,891	+		GFF1955	0.19	+0.5
147,006	-		GFF1955	0.28	+0.1
147,006	-		GFF1955	0.28	+0.9
147,055	-		GFF1955	0.32	-0.1
147,265	-		GFF1955	0.48	-1.2
147,265	-		GFF1955	0.48	-0.0
147,365	-		GFF1955	0.55	+1.2
147,365	-		GFF1955	0.55	+1.2
147,369	+		GFF1955	0.55	+0.3
147,370	-		GFF1955	0.56	+0.1
147,669	-		GFF1955	0.78	+0.6
147,728	-		GFF1955	0.83	+0.7
147,750	-		GFF1955	0.85	+1.3
147,752	+		GFF1955	0.85	-0.3
147,904	+				+0.2
147,905	-				+0.3
147,905	-				+0.1
147,956	-				+0.2
148,053	-				-0.1
148,417	+				+0.1
148,639	+				-0.3
148,765	+				+0.3