Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1894

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1893 and GFF1894 are separated by 931 nucleotidesGFF1894 and GFF1895 are separated by 93 nucleotidesGFF1895 and GFF1896 are separated by 91 nucleotides GFF1893 - LysR family transcriptional regulator lrhA, at 86,518 to 87,453 GFF1893 GFF1894 - Aspartate aminotransferase (EC 2.6.1.1), at 88,385 to 89,599 GFF1894 GFF1895 - Nucleotidase YfbR, HD superfamily, at 89,693 to 90,292 GFF1895 GFF1896 - Putative transport protein, at 90,384 to 92,210 GFF1896 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1 2 3at 87.531 kb on + strandat 87.827 kb on - strandat 88.481 kb on - strandat 88.607 kb on + strand, within GFF1894at 88.608 kb on - strand, within GFF1894at 88.675 kb on + strand, within GFF1894at 88.680 kb on - strand, within GFF1894at 88.680 kb on - strand, within GFF1894at 88.680 kb on - strand, within GFF1894at 88.821 kb on - strand, within GFF1894at 88.889 kb on - strand, within GFF1894at 89.102 kb on - strand, within GFF1894at 89.239 kb on + strand, within GFF1894at 89.261 kb on + strand, within GFF1894at 89.303 kb on + strand, within GFF1894at 89.381 kb on + strand, within GFF1894at 89.381 kb on + strand, within GFF1894at 89.381 kb on + strand, within GFF1894at 89.382 kb on - strand, within GFF1894at 89.382 kb on - strand, within GFF1894at 89.382 kb on - strand, within GFF1894at 89.792 kb on - strand, within GFF1895at 89.792 kb on - strand, within GFF1895at 89.891 kb on + strand, within GFF1895at 89.892 kb on - strand, within GFF1895at 89.911 kb on - strand, within GFF1895at 89.911 kb on - strand, within GFF1895at 89.969 kb on + strand, within GFF1895at 90.049 kb on + strand, within GFF1895at 90.221 kb on + strand, within GFF1895at 90.226 kb on + strand, within GFF1895at 90.479 kb on - strandat 90.479 kb on - strandat 90.531 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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87,531 + +1.1
87,827 - +0.3
88,481 - +0.3
88,607 + GFF1894 0.18 +0.7
88,608 - GFF1894 0.18 +0.7
88,675 + GFF1894 0.24 -1.6
88,680 - GFF1894 0.24 +0.2
88,680 - GFF1894 0.24 +0.2
88,680 - GFF1894 0.24 +0.3
88,821 - GFF1894 0.36 +2.8
88,889 - GFF1894 0.41 -0.4
89,102 - GFF1894 0.59 +0.6
89,239 + GFF1894 0.70 -0.0
89,261 + GFF1894 0.72 -0.1
89,303 + GFF1894 0.76 +0.5
89,381 + GFF1894 0.82 -0.4
89,381 + GFF1894 0.82 -0.3
89,381 + GFF1894 0.82 +0.2
89,382 - GFF1894 0.82 -0.0
89,382 - GFF1894 0.82 +0.8
89,382 - GFF1894 0.82 +0.3
89,792 - GFF1895 0.17 +0.5
89,792 - GFF1895 0.17 +0.7
89,891 + GFF1895 0.33 -0.0
89,892 - GFF1895 0.33 -2.2
89,911 - GFF1895 0.36 +0.2
89,911 - GFF1895 0.36 +0.0
89,969 + GFF1895 0.46 +0.1
90,049 + GFF1895 0.59 +0.2
90,221 + GFF1895 0.88 -0.2
90,226 + GFF1895 0.89 +0.1
90,479 - -0.1
90,479 - -0.8
90,531 - +0.8

Or see this region's nucleotide sequence