Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1874 and GFF1875 are separated by 81 nucleotides GFF1875 and GFF1876 are separated by 65 nucleotides GFF1876 and GFF1877 are separated by 40 nucleotides
GFF1874 - hypothetical protein, at 66,122 to 66,259
GFF1874
GFF1875 - Ribonuclease Z (EC 3.1.26.11), at 66,341 to 66,970
GFF1875
GFF1876 - Chemotaxis protein CheV (EC 2.7.3.-), at 67,036 to 68,037
GFF1876
GFF1877 - Von Willebrand factor type A domain protein, at 68,078 to 69,859
GFF1877
Position (kb) 67
68
69 Strain fitness (log2 ratio) -1
0
1 at 66.123 kb on + strand at 66.124 kb on - strand at 66.200 kb on - strand, within GFF1874 at 66.283 kb on - strand at 66.324 kb on + strand at 66.326 kb on + strand at 66.641 kb on + strand, within GFF1875 at 66.668 kb on + strand, within GFF1875 at 66.865 kb on + strand, within GFF1875 at 66.865 kb on + strand, within GFF1875 at 66.969 kb on - strand at 67.032 kb on + strand at 67.033 kb on - strand at 67.120 kb on - strand at 67.163 kb on + strand, within GFF1876 at 67.167 kb on + strand, within GFF1876 at 67.168 kb on - strand, within GFF1876 at 67.381 kb on - strand, within GFF1876 at 67.439 kb on - strand, within GFF1876 at 67.450 kb on - strand, within GFF1876 at 67.519 kb on + strand, within GFF1876 at 67.519 kb on + strand, within GFF1876 at 67.905 kb on + strand, within GFF1876 at 67.905 kb on + strand, within GFF1876 at 67.905 kb on + strand, within GFF1876 at 67.907 kb on + strand, within GFF1876 at 67.907 kb on + strand, within GFF1876 at 67.908 kb on - strand, within GFF1876 at 67.911 kb on + strand, within GFF1876 at 67.911 kb on + strand, within GFF1876 at 67.912 kb on - strand, within GFF1876 at 67.912 kb on - strand, within GFF1876 at 67.912 kb on - strand, within GFF1876 at 67.931 kb on - strand, within GFF1876 at 68.054 kb on + strand at 68.141 kb on - strand at 68.192 kb on - strand at 68.686 kb on - strand, within GFF1877 at 68.686 kb on - strand, within GFF1877 at 68.764 kb on + strand, within GFF1877 at 68.769 kb on - strand, within GFF1877 at 68.773 kb on + strand, within GFF1877 at 68.774 kb on - strand, within GFF1877 at 68.916 kb on - strand, within GFF1877 at 68.921 kb on + strand, within GFF1877 at 68.922 kb on - strand, within GFF1877
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 66,123 + -0.0 66,124 - -0.2 66,200 - GFF1874 0.57 +0.7 66,283 - +1.0 66,324 + +0.8 66,326 + -0.4 66,641 + GFF1875 0.48 -0.6 66,668 + GFF1875 0.52 -0.2 66,865 + GFF1875 0.83 -1.0 66,865 + GFF1875 0.83 -0.5 66,969 - -0.6 67,032 + -0.2 67,033 - +0.2 67,120 - +0.6 67,163 + GFF1876 0.13 -0.1 67,167 + GFF1876 0.13 -0.1 67,168 - GFF1876 0.13 +0.1 67,381 - GFF1876 0.34 +0.3 67,439 - GFF1876 0.40 -0.1 67,450 - GFF1876 0.41 -0.6 67,519 + GFF1876 0.48 +0.1 67,519 + GFF1876 0.48 +0.9 67,905 + GFF1876 0.87 +0.2 67,905 + GFF1876 0.87 +0.5 67,905 + GFF1876 0.87 +0.1 67,907 + GFF1876 0.87 -0.2 67,907 + GFF1876 0.87 -0.0 67,908 - GFF1876 0.87 -0.1 67,911 + GFF1876 0.87 +0.2 67,911 + GFF1876 0.87 +0.7 67,912 - GFF1876 0.87 +0.3 67,912 - GFF1876 0.87 +0.0 67,912 - GFF1876 0.87 +1.0 67,931 - GFF1876 0.89 -0.2 68,054 + +0.0 68,141 - -0.5 68,192 - +0.1 68,686 - GFF1877 0.34 -0.7 68,686 - GFF1877 0.34 +0.1 68,764 + GFF1877 0.38 -0.0 68,769 - GFF1877 0.39 -0.4 68,773 + GFF1877 0.39 +0.6 68,774 - GFF1877 0.39 -0.3 68,916 - GFF1877 0.47 -0.2 68,921 + GFF1877 0.47 +0.2 68,922 - GFF1877 0.47 +0.4
Or see this region's nucleotide sequence