Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1873

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
64,623	+		GFF1871	0.65	-1.6
64,624	-		GFF1871	0.66	-0.2
64,699	+		GFF1871	0.71	-0.4
64,726	-		GFF1871	0.73	-0.1
64,753	+		GFF1871	0.75	-0.3
64,754	-		GFF1871	0.76	+0.0
64,754	-		GFF1871	0.76	+0.6
64,757	+		GFF1871	0.76	-0.2
64,855	+		GFF1871	0.83	+0.1
64,910	+		GFF1871	0.88	+0.4
65,061	+				-1.3
65,138	-				+1.2
65,228	-		GFF1872	0.19	-0.1
65,289	+		GFF1872	0.39	-1.0
65,296	-		GFF1872	0.41	+0.7
65,371	-		GFF1872	0.65	-0.9
65,403	-		GFF1872	0.76	-0.1
65,470	-				+1.1
65,508	+				-0.2
65,509	-				-0.3
65,512	+				+0.1
65,513	-				+0.3
65,513	-				-0.1
65,655	+		GFF1873	0.27	+0.7
65,655	+		GFF1873	0.27	-0.1
65,657	+		GFF1873	0.27	+0.4
65,843	-		GFF1873	0.68	+0.5
65,862	-		GFF1873	0.72	-0.3
66,123	+				-0.0
66,124	-				-0.2
66,200	-		GFF1874	0.57	+0.7
66,283	-				+1.0
66,324	+				+0.8
66,326	+				-0.4
66,641	+		GFF1875	0.48	-0.6
66,668	+		GFF1875	0.52	-0.2
66,865	+		GFF1875	0.83	-1.0
66,865	+		GFF1875	0.83	-0.5
66,969	-				-0.6