Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1804 and GFF1805 are separated by 75 nucleotides GFF1805 and GFF1806 overlap by 4 nucleotides
GFF1804 - Sensory histidine kinase in two-component regulatory system with RstA, at 26,078 to 27,379
GFF1804
GFF1805 - DNA replication terminus site-binding protein, at 27,455 to 28,384
GFF1805
GFF1806 - Fumarate hydratase class II (EC 4.2.1.2), at 28,381 to 29,784
GFF1806
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1 at 26.499 kb on + strand, within GFF1804 at 26.692 kb on + strand, within GFF1804 at 26.830 kb on + strand, within GFF1804 at 27.000 kb on + strand, within GFF1804 at 27.065 kb on - strand, within GFF1804 at 27.085 kb on + strand, within GFF1804 at 27.184 kb on - strand, within GFF1804 at 27.265 kb on + strand at 27.417 kb on + strand at 27.419 kb on + strand at 27.419 kb on + strand at 27.419 kb on + strand at 27.419 kb on + strand at 27.419 kb on + strand at 27.419 kb on + strand at 27.420 kb on - strand at 27.420 kb on - strand at 27.420 kb on - strand at 27.451 kb on + strand at 27.451 kb on + strand at 27.533 kb on - strand at 27.557 kb on - strand, within GFF1805 at 27.619 kb on + strand, within GFF1805 at 27.777 kb on + strand, within GFF1805 at 27.895 kb on - strand, within GFF1805 at 27.937 kb on + strand, within GFF1805 at 28.184 kb on + strand, within GFF1805 at 28.185 kb on - strand, within GFF1805 at 28.239 kb on + strand, within GFF1805 at 28.307 kb on - strand at 28.371 kb on - strand at 28.777 kb on + strand, within GFF1806 at 28.778 kb on - strand, within GFF1806 at 28.778 kb on - strand, within GFF1806 at 29.077 kb on - strand, within GFF1806
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 26,499 + GFF1804 0.32 -0.3 26,692 + GFF1804 0.47 -0.4 26,830 + GFF1804 0.58 +0.4 27,000 + GFF1804 0.71 -0.4 27,065 - GFF1804 0.76 -0.9 27,085 + GFF1804 0.77 +0.5 27,184 - GFF1804 0.85 -0.4 27,265 + -0.1 27,417 + -0.2 27,419 + +0.5 27,419 + -0.1 27,419 + +0.2 27,419 + +0.8 27,419 + +0.9 27,419 + -0.8 27,420 - -0.6 27,420 - -1.8 27,420 - +1.0 27,451 + +0.6 27,451 + -0.8 27,533 - +0.0 27,557 - GFF1805 0.11 +0.5 27,619 + GFF1805 0.18 +0.0 27,777 + GFF1805 0.35 -1.3 27,895 - GFF1805 0.47 -0.9 27,937 + GFF1805 0.52 -1.1 28,184 + GFF1805 0.78 -0.2 28,185 - GFF1805 0.78 +0.1 28,239 + GFF1805 0.84 -0.5 28,307 - +0.5 28,371 - -0.1 28,777 + GFF1806 0.28 -0.7 28,778 - GFF1806 0.28 -0.0 28,778 - GFF1806 0.28 +0.6 29,077 - GFF1806 0.50 -0.6
Or see this region's nucleotide sequence