Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1735 and GFF1736 overlap by 1 nucleotides GFF1736 and GFF1737 are separated by 50 nucleotides GFF1737 and GFF1738 are separated by 14 nucleotides GFF1738 and GFF1739 are separated by 94 nucleotides
GFF1735 - Phosphate transport system permease protein PstC (TC 3.A.1.7.1), at 36,390 to 37,349
GFF1735
GFF1736 - Phosphate transport system permease protein PstA (TC 3.A.1.7.1), at 37,349 to 38,239
GFF1736
GFF1737 - Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1), at 38,290 to 39,099
GFF1737
GFF1738 - Phosphate transport system regulatory protein PhoU, at 39,114 to 39,839
GFF1738
GFF1739 - Putative phosphatase YieH, at 39,934 to 40,599
GFF1739
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.316 kb on + strand at 37.632 kb on + strand, within GFF1736 at 37.667 kb on + strand, within GFF1736 at 38.184 kb on + strand at 38.248 kb on + strand at 38.248 kb on + strand at 38.257 kb on + strand at 38.380 kb on + strand, within GFF1737 at 38.380 kb on + strand, within GFF1737 at 38.559 kb on + strand, within GFF1737 at 38.647 kb on + strand, within GFF1737 at 38.997 kb on + strand, within GFF1737 at 39.001 kb on + strand, within GFF1737 at 39.806 kb on + strand at 39.880 kb on + strand at 39.886 kb on + strand at 39.935 kb on + strand at 39.942 kb on + strand at 39.993 kb on + strand at 40.029 kb on + strand, within GFF1739
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 37,316 + +0.5 37,632 + GFF1736 0.32 +0.9 37,667 + GFF1736 0.36 -0.2 38,184 + +0.1 38,248 + +0.5 38,248 + +0.0 38,257 + +0.2 38,380 + GFF1737 0.11 -2.1 38,380 + GFF1737 0.11 -2.3 38,559 + GFF1737 0.33 -3.0 38,647 + GFF1737 0.44 -1.7 38,997 + GFF1737 0.87 -0.4 39,001 + GFF1737 0.88 -0.9 39,806 + +0.0 39,880 + -1.1 39,886 + -0.1 39,935 + +0.2 39,942 + +0.0 39,993 + -0.5 40,029 + GFF1739 0.14 -0.2
Or see this region's nucleotide sequence