Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1693

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,677	+				+0.0
1,688	-				+0.0
1,691	-				-0.5
2,060	+		GFF1692	0.46	+0.3
2,060	+		GFF1692	0.46	-0.4
2,062	+		GFF1692	0.46	+1.0
2,168	+		GFF1692	0.60	-1.2
2,169	-		GFF1692	0.60	-0.2
2,378	-		GFF1692	0.86	-0.1
2,378	-		GFF1692	0.86	-0.3
2,407	-		GFF1692	0.89	-0.4
2,410	+		GFF1692	0.90	-0.7
2,542	+				+0.3
2,543	-				-1.1
2,545	+				-0.0
2,545	+				+0.2
2,546	-				+1.0
2,546	-				+0.5
2,608	-				-0.4
2,652	+				+0.4
2,750	+		GFF1693	0.11	-0.1
3,104	+		GFF1693	0.47	-0.5
3,153	+		GFF1693	0.51	+1.4
3,249	+		GFF1693	0.61	-0.5
3,355	+		GFF1693	0.72	-0.0
3,400	-		GFF1693	0.76	+0.9
3,411	-		GFF1693	0.78	-0.1
3,628	-				+1.7
3,628	-				-0.0
3,628	-				-0.3
3,823	+		GFF1694	0.26	-0.7
3,823	+		GFF1694	0.26	-0.3
3,824	-		GFF1694	0.26	+1.2
3,874	+		GFF1694	0.33	-0.2
3,878	-		GFF1694	0.34	+0.3
4,110	+		GFF1694	0.68	+0.2
4,128	+		GFF1694	0.71	+0.0
4,128	+		GFF1694	0.71	-0.2
4,181	+		GFF1694	0.79	+0.1
4,182	-		GFF1694	0.79	-0.0
4,209	+		GFF1694	0.83	-0.1
4,453	+		GFF1695	0.18	+0.6
4,454	-		GFF1695	0.18	-0.2
4,497	-		GFF1695	0.24	+0.4