Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1668

Experiment: Acanthamoeba sp., muxed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1666 and GFF1667 are separated by 46 nucleotidesGFF1667 and GFF1668 are separated by 43 nucleotidesGFF1668 and GFF1669 are separated by 20 nucleotides GFF1666 - Methyl-accepting chemotaxis protein, at 51,177 to 52,838 GFF1666 GFF1667 - hypothetical protein, at 52,885 to 53,031 GFF1667 GFF1668 - Positive regulator of CheA protein activity (CheW), at 53,075 to 53,578 GFF1668 GFF1669 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 53,599 to 55,608 GFF1669 Position (kb) 53 54Strain fitness (log2 ratio) -2 -1 0 1at 52.336 kb on + strand, within GFF1666at 52.403 kb on + strand, within GFF1666at 52.428 kb on - strand, within GFF1666at 52.776 kb on + strandat 52.839 kb on - strandat 53.030 kb on - strandat 53.274 kb on - strand, within GFF1668at 53.402 kb on - strand, within GFF1668at 53.429 kb on - strand, within GFF1668at 53.513 kb on - strand, within GFF1668at 53.581 kb on + strandat 53.581 kb on + strandat 53.582 kb on - strandat 53.620 kb on - strandat 53.724 kb on - strandat 54.123 kb on + strand, within GFF1669at 54.325 kb on - strand, within GFF1669at 54.325 kb on - strand, within GFF1669at 54.573 kb on - strand, within GFF1669

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
remove
52,336 + GFF1666 0.70 -0.3
52,403 + GFF1666 0.74 -0.0
52,428 - GFF1666 0.75 -0.2
52,776 + +0.2
52,839 - +0.6
53,030 - -0.1
53,274 - GFF1668 0.39 -0.1
53,402 - GFF1668 0.65 +1.4
53,429 - GFF1668 0.70 -0.5
53,513 - GFF1668 0.87 -0.8
53,581 + -0.6
53,581 + -0.2
53,582 - -1.3
53,620 - +0.5
53,724 - -0.2
54,123 + GFF1669 0.26 -1.8
54,325 - GFF1669 0.36 -0.5
54,325 - GFF1669 0.36 +0.1
54,573 - GFF1669 0.48 -0.4

Or see this region's nucleotide sequence