Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1572 and GFF1573 are separated by 9 nucleotides GFF1573 and GFF1574 are separated by 78 nucleotides GFF1574 and GFF1575 are separated by 89 nucleotides GFF1575 and GFF1576 are separated by 370 nucleotides
GFF1572 - Transcriptional regulator, ArsR family, at 34,223 to 34,522
GFF1572
GFF1573 - Rhodanese-related sulfurtransferases, at 34,532 to 35,059
GFF1573
GFF1574 - corresponds to STY2919 from Accession AL513382: Salmonella typhi CT18, at 35,138 to 35,317
GFF1574
GFF1575 - DNA-binding protein H-NS, at 35,407 to 35,808
GFF1575
GFF1576 - hypothetical protein, at 36,179 to 36,292
GFF1576
Position (kb) 35
36 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 34.302 kb on + strand, within GFF1572 at 34.315 kb on + strand, within GFF1572 at 34.316 kb on - strand, within GFF1572 at 34.512 kb on - strand at 34.546 kb on - strand at 34.619 kb on + strand, within GFF1573 at 34.762 kb on - strand, within GFF1573 at 34.931 kb on - strand, within GFF1573 at 34.931 kb on - strand, within GFF1573 at 35.023 kb on - strand at 35.091 kb on + strand at 35.091 kb on + strand at 35.111 kb on + strand at 35.112 kb on - strand at 35.114 kb on - strand at 35.114 kb on - strand at 35.161 kb on - strand, within GFF1574 at 35.408 kb on + strand at 35.879 kb on + strand at 36.009 kb on - strand at 36.031 kb on + strand at 36.147 kb on - strand at 36.151 kb on + strand at 36.174 kb on + strand at 36.217 kb on + strand, within GFF1576
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 34,302 + GFF1572 0.26 -0.4 34,315 + GFF1572 0.31 -0.4 34,316 - GFF1572 0.31 -0.1 34,512 - -0.2 34,546 - -0.3 34,619 + GFF1573 0.16 +0.6 34,762 - GFF1573 0.44 +0.2 34,931 - GFF1573 0.76 +0.6 34,931 - GFF1573 0.76 +0.1 35,023 - +0.5 35,091 + +0.0 35,091 + +0.1 35,111 + +1.2 35,112 - +0.1 35,114 - +0.3 35,114 - -0.4 35,161 - GFF1574 0.13 +4.1 35,408 + -0.2 35,879 + -0.5 36,009 - -0.7 36,031 + +0.4 36,147 - +0.1 36,151 + -1.6 36,174 + +0.3 36,217 + GFF1576 0.33 -0.3
Or see this region's nucleotide sequence