Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1559

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
21,716	+		GFF1557	0.83	-0.0
21,728	+		GFF1557	0.84	-0.3
21,818	+				+2.1
21,860	-				-0.2
21,928	+				-0.7
22,042	-		GFF1558	0.15	+0.5
22,203	-		GFF1558	0.39	+1.4
22,325	+		GFF1558	0.57	-0.6
22,458	+		GFF1558	0.76	+0.3
22,712	+		GFF1559	0.47	+0.1
22,823	-				-0.4
22,967	+		GFF1560	0.20	-0.6
22,967	+		GFF1560	0.20	-0.3
22,968	-		GFF1560	0.20	-0.2
22,968	-		GFF1560	0.20	-0.4
22,969	+		GFF1560	0.20	-0.5
22,970	-		GFF1560	0.20	-0.3
23,248	+		GFF1560	0.49	+0.0
23,543	+		GFF1560	0.79	-0.3
23,544	-		GFF1560	0.79	+0.9
23,574	-		GFF1560	0.82	-0.1
23,688	-				-1.3
23,705	-				-1.1