Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1548

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
9,803	-		GFF1547	0.23	+0.3
9,850	+		GFF1547	0.27	-0.4
9,961	-		GFF1547	0.36	+0.1
10,106	+		GFF1547	0.47	+1.1
10,255	+		GFF1547	0.59	-1.5
10,255	+		GFF1547	0.59	-0.2
10,588	+		GFF1547	0.86	-0.1
10,682	+				-2.3
10,710	-				+0.1
10,743	+				-0.2
10,798	-				-0.2
10,798	-				-0.4
10,930	-		GFF1548	0.15	-0.0
11,038	+		GFF1548	0.26	-1.0
11,040	+		GFF1548	0.26	-0.1
11,040	+		GFF1548	0.26	-0.1
11,040	+		GFF1548	0.26	-0.1
11,040	+		GFF1548	0.26	+0.1
11,040	+		GFF1548	0.26	-2.0
11,040	+		GFF1548	0.26	+0.1
11,041	-		GFF1548	0.26	-0.2
11,041	-		GFF1548	0.26	+0.1
11,042	+		GFF1548	0.26	+0.4
11,042	+		GFF1548	0.26	+0.4
11,042	+		GFF1548	0.26	+1.8
11,042	+		GFF1548	0.26	-0.0
11,042	+		GFF1548	0.26	+0.2
11,145	-		GFF1548	0.38	+0.1
11,175	+		GFF1548	0.41	+0.9
11,176	-		GFF1548	0.41	+0.1
11,176	-		GFF1548	0.41	-0.3
11,176	-		GFF1548	0.41	+1.3
11,285	+		GFF1548	0.52	+1.4
11,286	-		GFF1548	0.53	-0.6
11,352	+		GFF1548	0.60	+0.2
11,402	+		GFF1548	0.65	-0.0
11,402	+		GFF1548	0.65	-0.3
11,403	-		GFF1548	0.65	-0.5
11,406	+		GFF1548	0.65	-0.4
11,407	-		GFF1548	0.65	-0.1
11,410	-		GFF1548	0.66	+0.0
11,410	-		GFF1548	0.66	-0.1
11,439	-		GFF1548	0.69	-0.0
11,462	+		GFF1548	0.71	+0.2
11,507	-		GFF1548	0.76	-0.5
11,796	+				+0.2
11,800	-				+0.2
11,819	-				+0.0
11,821	-				+0.0
11,821	-				-0.1
11,821	-				+0.1
11,824	+				+0.4
11,825	-				+0.3
11,910	+				+0.1
12,018	+		GFF1549	0.11	-0.1
12,019	-		GFF1549	0.11	+0.3
12,076	+		GFF1549	0.14	+0.4
12,076	+		GFF1549	0.14	-0.6
12,077	-		GFF1549	0.14	-1.2
12,144	+		GFF1549	0.17	+0.1
12,145	-		GFF1549	0.17	-0.7
12,145	-		GFF1549	0.17	-0.3
12,157	+		GFF1549	0.18	-1.2
12,248	+		GFF1549	0.22	-0.2
12,248	+		GFF1549	0.22	-1.4
12,436	+		GFF1549	0.31	-0.2
12,473	+		GFF1549	0.32	+0.2
12,474	-		GFF1549	0.32	+1.0
12,477	+		GFF1549	0.32	-0.6
12,649	+		GFF1549	0.40	-0.1
12,706	+		GFF1549	0.43	-0.8