Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1528

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
31,033	+		GFF1527	0.45	-0.1
31,234	-		GFF1527	0.61	+0.5
31,234	-		GFF1527	0.61	+0.1
31,392	+		GFF1527	0.73	-0.8
31,400	+		GFF1527	0.74	-0.3
31,403	+		GFF1527	0.74	+1.3
31,456	+		GFF1527	0.78	+0.4
31,457	-		GFF1527	0.79	+0.2
31,464	-		GFF1527	0.79	+0.4
31,857	-				-0.4
32,044	+		GFF1528	0.14	-0.1
32,044	+		GFF1528	0.14	-0.5
32,044	+		GFF1528	0.14	+0.3
32,175	+		GFF1528	0.31	-0.9
32,200	-		GFF1528	0.34	-0.6
32,234	-		GFF1528	0.38	+1.6
32,356	-		GFF1528	0.53	-0.0
32,373	+		GFF1528	0.55	-1.3
32,457	-		GFF1528	0.66	-0.2
32,509	+		GFF1528	0.72	-1.4
32,509	+		GFF1528	0.72	+0.2
32,621	+		GFF1528	0.86	+0.3
32,842	+				+0.4
32,846	+				+0.4
32,847	-				+0.0
32,847	-				+0.2
32,880	-		GFF1529	0.11	-0.0
32,885	+		GFF1529	0.12	-0.4
32,885	+		GFF1529	0.12	-0.1
32,933	-		GFF1529	0.15	+0.4
32,933	-		GFF1529	0.15	+0.8
32,937	-		GFF1529	0.15	-0.1
33,028	+		GFF1529	0.22	+0.8
33,028	+		GFF1529	0.22	-0.2
33,042	+		GFF1529	0.23	+0.0
33,042	+		GFF1529	0.23	-0.1
33,042	+		GFF1529	0.23	-0.0
33,043	-		GFF1529	0.23	-0.8
33,043	-		GFF1529	0.23	+1.1
33,043	-		GFF1529	0.23	+1.2
33,114	-		GFF1529	0.28	+1.0
33,155	-		GFF1529	0.30	+0.7
33,160	-		GFF1529	0.31	+0.2
33,266	+		GFF1529	0.38	+0.3
33,314	-		GFF1529	0.42	-0.4
33,411	+		GFF1529	0.48	-0.0
33,522	-		GFF1529	0.56	-1.8