Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1504

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
9,640	-		GFF1503	0.25	+1.8
9,725	+		GFF1503	0.34	-0.2
9,805	+		GFF1503	0.43	+2.5
9,841	+		GFF1503	0.47	+0.8
10,135	+		GFF1503	0.81	-0.5
10,135	+		GFF1503	0.81	-0.6
10,135	+		GFF1503	0.81	+0.0
10,139	+		GFF1503	0.81	+0.8
10,154	+		GFF1503	0.83	-1.6
10,481	+				-1.0
10,826	+		GFF1504	0.18	+2.8
10,826	+		GFF1504	0.18	-2.8
11,938	+		GFF1504	0.77	-0.0
11,938	+		GFF1504	0.77	+0.5
11,939	-		GFF1504	0.77	-0.4
11,948	+		GFF1504	0.77	-0.6
12,049	+		GFF1504	0.83	+0.1
12,050	-		GFF1504	0.83	-0.7
12,371	+				+0.7
12,412	-				-1.0
12,493	+				+0.1
12,504	+				+0.2
12,504	+				-0.8
12,538	+				-0.8
12,727	+		GFF1505	0.16	-0.5
12,809	-		GFF1505	0.23	+0.7
12,824	+		GFF1505	0.24	+0.2
12,825	-		GFF1505	0.24	+0.7
12,842	+		GFF1505	0.25	+1.0
12,875	-		GFF1505	0.28	+0.5
12,875	-		GFF1505	0.28	-0.1
13,097	-		GFF1505	0.46	-0.7
13,176	-		GFF1505	0.52	-1.3