Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1448

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
109,582	-				+0.5
109,766	+		GFF1447	0.28	-0.1
109,767	-		GFF1447	0.28	+0.2
109,767	-		GFF1447	0.28	-0.0
109,784	+		GFF1447	0.30	+0.0
109,785	-		GFF1447	0.30	+0.2
109,785	-		GFF1447	0.30	-0.6
109,825	-		GFF1447	0.35	-0.8
109,828	+		GFF1447	0.35	+0.3
109,829	-		GFF1447	0.35	+0.5
109,829	-		GFF1447	0.35	-0.0
109,829	-		GFF1447	0.35	+0.1
109,829	-		GFF1447	0.35	-0.3
110,013	-		GFF1447	0.56	+0.3
110,152	+		GFF1447	0.72	+0.3
110,240	+		GFF1447	0.81	-0.1
110,241	-		GFF1447	0.82	-0.3
110,264	+		GFF1447	0.84	+0.5
110,270	-		GFF1447	0.85	+0.2
110,275	+		GFF1447	0.85	-0.7
110,276	-		GFF1447	0.85	+0.3
110,276	-		GFF1447	0.85	+0.1
110,330	+				+0.4
110,382	+				-0.1
110,438	+				-0.2
110,470	-				-0.2
110,470	-				-0.2
110,531	+				+0.3
110,591	-		GFF1448	0.20	-0.0
110,663	+		GFF1448	0.38	-0.3
110,663	+		GFF1448	0.38	+0.3
110,664	-		GFF1448	0.38	+0.1
110,699	+		GFF1448	0.46	-0.5
110,782	-		GFF1448	0.67	-1.4
110,842	+		GFF1448	0.81	-0.6
110,842	+		GFF1448	0.81	+0.1
110,849	-		GFF1448	0.83	-0.9
110,890	-				-0.5
110,890	-				-0.0
110,934	-				-0.8
110,984	-		GFF1449	0.11	-0.2
111,017	+		GFF1449	0.15	+0.2
111,064	-		GFF1449	0.22	-0.3
111,064	-		GFF1449	0.22	+0.3
111,064	-		GFF1449	0.22	+0.5
111,079	+		GFF1449	0.24	+0.2
111,291	-		GFF1449	0.55	+0.5
111,537	-				+0.6
111,640	+				-0.3
111,641	-				-0.1
111,779	+				-0.3
111,905	+		GFF1450	0.16	+0.3