Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1379 and GFF1380 are separated by 8 nucleotides GFF1380 and GFF1381 are separated by 9 nucleotides GFF1381 and GFF1382 overlap by 13 nucleotides GFF1382 and GFF1383 overlap by 1 nucleotides
GFF1379 - hypothetical protein, at 27,603 to 27,728
GFF1379
GFF1380 - Putative phage baseplate component, at 27,737 to 28,459
GFF1380
GFF1381 - Gene D protein, at 28,469 to 29,512
GFF1381
GFF1382 - Putative inner membrane protein, at 29,500 to 29,709
GFF1382
GFF1383 - FIG00639790: hypothetical protein, at 29,709 to 30,662
GFF1383
Position (kb) 28
29
30 Strain fitness (log2 ratio) -1
0
1 at 27.536 kb on + strand at 27.540 kb on + strand at 27.540 kb on + strand at 27.812 kb on - strand, within GFF1380 at 27.984 kb on - strand, within GFF1380 at 27.984 kb on - strand, within GFF1380 at 28.062 kb on - strand, within GFF1380 at 28.075 kb on + strand, within GFF1380 at 28.076 kb on - strand, within GFF1380 at 28.076 kb on - strand, within GFF1380 at 28.076 kb on - strand, within GFF1380 at 28.084 kb on + strand, within GFF1380 at 28.233 kb on + strand, within GFF1380 at 28.360 kb on + strand, within GFF1380 at 28.459 kb on + strand at 28.459 kb on + strand at 28.460 kb on - strand at 28.595 kb on + strand, within GFF1381 at 28.596 kb on - strand, within GFF1381 at 28.864 kb on + strand, within GFF1381 at 28.865 kb on - strand, within GFF1381 at 28.879 kb on - strand, within GFF1381 at 28.980 kb on + strand, within GFF1381 at 28.981 kb on - strand, within GFF1381 at 28.981 kb on - strand, within GFF1381 at 29.126 kb on - strand, within GFF1381 at 29.241 kb on + strand, within GFF1381 at 29.381 kb on - strand, within GFF1381 at 29.384 kb on - strand, within GFF1381 at 29.413 kb on - strand at 29.413 kb on - strand at 29.427 kb on + strand at 29.441 kb on - strand at 29.501 kb on + strand at 29.547 kb on + strand, within GFF1382 at 29.703 kb on - strand at 29.724 kb on - strand at 30.162 kb on - strand, within GFF1383
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 27,536 + +0.2 27,540 + +0.1 27,540 + -0.0 27,812 - GFF1380 0.10 +0.5 27,984 - GFF1380 0.34 -0.0 27,984 - GFF1380 0.34 -0.4 28,062 - GFF1380 0.45 +0.3 28,075 + GFF1380 0.47 -0.3 28,076 - GFF1380 0.47 -0.3 28,076 - GFF1380 0.47 -0.1 28,076 - GFF1380 0.47 -0.5 28,084 + GFF1380 0.48 -0.4 28,233 + GFF1380 0.69 +0.1 28,360 + GFF1380 0.86 +0.8 28,459 + +0.2 28,459 + -0.5 28,460 - -0.4 28,595 + GFF1381 0.12 +0.2 28,596 - GFF1381 0.12 -0.0 28,864 + GFF1381 0.38 -0.9 28,865 - GFF1381 0.38 -0.2 28,879 - GFF1381 0.39 +0.6 28,980 + GFF1381 0.49 +0.1 28,981 - GFF1381 0.49 +0.2 28,981 - GFF1381 0.49 +0.1 29,126 - GFF1381 0.63 +0.5 29,241 + GFF1381 0.74 +0.4 29,381 - GFF1381 0.87 -0.1 29,384 - GFF1381 0.88 -0.2 29,413 - +0.1 29,413 - +0.6 29,427 + +0.5 29,441 - -0.9 29,501 + -0.0 29,547 + GFF1382 0.22 +0.3 29,703 - +0.3 29,724 - -0.2 30,162 - GFF1383 0.47 -0.0
Or see this region's nucleotide sequence