Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1355

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
5,977	-		GFF1354	0.44	-0.0
5,977	-		GFF1354	0.44	+0.1
5,984	-		GFF1354	0.44	-0.3
6,056	-		GFF1354	0.49	-0.7
6,058	-		GFF1354	0.49	+0.1
6,110	+		GFF1354	0.52	+0.5
6,111	-		GFF1354	0.52	-0.6
6,426	+		GFF1354	0.70	+0.6
6,427	-		GFF1354	0.70	+0.4
6,447	+		GFF1354	0.71	-0.3
6,448	-		GFF1354	0.71	-1.7
6,526	+		GFF1354	0.75	-0.2
6,576	+		GFF1354	0.78	+0.0
6,625	+		GFF1354	0.81	-0.3
6,632	-		GFF1354	0.81	+0.0
6,647	-		GFF1354	0.82	+0.4
6,723	+		GFF1354	0.87	+0.2
6,724	-		GFF1354	0.87	+0.0
6,875	+				-2.7
6,876	-				+0.5
6,876	-				-0.2
6,886	+				+0.4
6,886	+				-0.9
6,886	+				-0.2
6,886	+				-0.2
6,887	-				+0.5
6,887	-				-0.3
6,887	-				-0.7
6,913	-				-0.2
6,939	+				-0.1
6,940	-				-0.0
7,082	+		GFF1355	0.37	+1.5
7,156	+		GFF1355	0.54	+0.5
7,196	+		GFF1355	0.63	+0.1
7,208	+		GFF1355	0.66	-0.3
7,355	+				+0.4
7,355	+				-0.9
7,485	+		GFF1356	0.18	-1.0
7,605	+		GFF1356	0.32	-1.1
8,214	-				-0.5
8,310	+		GFF1357	0.17	-0.1