Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1354

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1352 and GFF1353 are separated by 3 nucleotidesGFF1353 and GFF1354 overlap by 25 nucleotidesGFF1354 and GFF1355 overlap by 37 nucleotidesGFF1355 and GFF1356 overlap by 17 nucleotides GFF1352 - Isocitrate lyase (EC 4.1.3.1), at 3,800 to 5,104 GFF1352 GFF1353 - hypothetical protein, at 5,108 to 5,230 GFF1353 GFF1354 - Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-), at 5,206 to 6,957 GFF1354 GFF1355 - hypothetical protein, at 6,921 to 7,355 GFF1355 GFF1356 - Acetate operon repressor, at 7,339 to 8,163 GFF1356 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 4.247 kb on + strand, within GFF1352at 4.555 kb on + strand, within GFF1352at 4.586 kb on + strand, within GFF1352at 4.673 kb on - strand, within GFF1352at 4.673 kb on - strand, within GFF1352at 4.673 kb on - strand, within GFF1352at 4.747 kb on + strand, within GFF1352at 4.839 kb on - strand, within GFF1352at 4.846 kb on + strand, within GFF1352at 4.904 kb on + strand, within GFF1352at 4.932 kb on - strand, within GFF1352at 5.019 kb on - strandat 5.019 kb on - strandat 5.148 kb on + strand, within GFF1353at 5.406 kb on + strand, within GFF1354at 5.407 kb on - strand, within GFF1354at 5.407 kb on - strand, within GFF1354at 5.710 kb on - strand, within GFF1354at 5.730 kb on + strand, within GFF1354at 5.731 kb on - strand, within GFF1354at 5.809 kb on + strand, within GFF1354at 5.844 kb on - strand, within GFF1354at 5.917 kb on - strand, within GFF1354at 5.977 kb on - strand, within GFF1354at 5.977 kb on - strand, within GFF1354at 5.984 kb on - strand, within GFF1354at 6.056 kb on - strand, within GFF1354at 6.058 kb on - strand, within GFF1354at 6.110 kb on + strand, within GFF1354at 6.111 kb on - strand, within GFF1354at 6.426 kb on + strand, within GFF1354at 6.427 kb on - strand, within GFF1354at 6.447 kb on + strand, within GFF1354at 6.448 kb on - strand, within GFF1354at 6.526 kb on + strand, within GFF1354at 6.576 kb on + strand, within GFF1354at 6.625 kb on + strand, within GFF1354at 6.632 kb on - strand, within GFF1354at 6.647 kb on - strand, within GFF1354at 6.723 kb on + strand, within GFF1354at 6.724 kb on - strand, within GFF1354at 6.875 kb on + strandat 6.876 kb on - strandat 6.876 kb on - strandat 6.886 kb on + strandat 6.886 kb on + strandat 6.886 kb on + strandat 6.886 kb on + strandat 6.887 kb on - strandat 6.887 kb on - strandat 6.887 kb on - strandat 6.913 kb on - strandat 6.939 kb on + strandat 6.940 kb on - strandat 7.082 kb on + strand, within GFF1355at 7.156 kb on + strand, within GFF1355at 7.196 kb on + strand, within GFF1355at 7.208 kb on + strand, within GFF1355at 7.355 kb on + strandat 7.355 kb on + strandat 7.485 kb on + strand, within GFF1356at 7.605 kb on + strand, within GFF1356

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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4,247 + GFF1352 0.34 +0.8
4,555 + GFF1352 0.58 +0.1
4,586 + GFF1352 0.60 +0.1
4,673 - GFF1352 0.67 +0.6
4,673 - GFF1352 0.67 +0.5
4,673 - GFF1352 0.67 +0.2
4,747 + GFF1352 0.73 +0.3
4,839 - GFF1352 0.80 -0.0
4,846 + GFF1352 0.80 -0.2
4,904 + GFF1352 0.85 +0.5
4,932 - GFF1352 0.87 -0.2
5,019 - -0.4
5,019 - +0.2
5,148 + GFF1353 0.33 +0.7
5,406 + GFF1354 0.11 +0.2
5,407 - GFF1354 0.11 +0.9
5,407 - GFF1354 0.11 +0.1
5,710 - GFF1354 0.29 +0.2
5,730 + GFF1354 0.30 -0.4
5,731 - GFF1354 0.30 +0.2
5,809 + GFF1354 0.34 -0.1
5,844 - GFF1354 0.36 +2.0
5,917 - GFF1354 0.41 +1.2
5,977 - GFF1354 0.44 -0.0
5,977 - GFF1354 0.44 +0.1
5,984 - GFF1354 0.44 -0.3
6,056 - GFF1354 0.49 -0.7
6,058 - GFF1354 0.49 +0.1
6,110 + GFF1354 0.52 +0.5
6,111 - GFF1354 0.52 -0.6
6,426 + GFF1354 0.70 +0.6
6,427 - GFF1354 0.70 +0.4
6,447 + GFF1354 0.71 -0.3
6,448 - GFF1354 0.71 -1.7
6,526 + GFF1354 0.75 -0.2
6,576 + GFF1354 0.78 +0.0
6,625 + GFF1354 0.81 -0.3
6,632 - GFF1354 0.81 +0.0
6,647 - GFF1354 0.82 +0.4
6,723 + GFF1354 0.87 +0.2
6,724 - GFF1354 0.87 +0.0
6,875 + -2.7
6,876 - +0.5
6,876 - -0.2
6,886 + +0.4
6,886 + -0.9
6,886 + -0.2
6,886 + -0.2
6,887 - +0.5
6,887 - -0.3
6,887 - -0.7
6,913 - -0.2
6,939 + -0.1
6,940 - -0.0
7,082 + GFF1355 0.37 +1.5
7,156 + GFF1355 0.54 +0.5
7,196 + GFF1355 0.63 +0.1
7,208 + GFF1355 0.66 -0.3
7,355 + +0.4
7,355 + -0.9
7,485 + GFF1356 0.18 -1.0
7,605 + GFF1356 0.32 -1.1

Or see this region's nucleotide sequence