Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1351

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,234	-		GFF1350	0.28	-0.5
1,374	-		GFF1350	0.44	-0.6
1,419	-		GFF1350	0.48	+0.4
1,470	+		GFF1350	0.54	+0.2
1,470	+		GFF1350	0.54	-0.5
1,549	-		GFF1350	0.62	+0.2
1,647	-		GFF1350	0.73	-0.6
1,652	+		GFF1350	0.73	+1.0
1,652	+		GFF1350	0.73	+0.5
1,652	+		GFF1350	0.73	-0.2
1,653	-		GFF1350	0.74	-0.3
1,680	+		GFF1350	0.76	+0.0
1,755	+		GFF1350	0.85	+0.4
1,824	-				-0.6
1,842	+				-0.2
2,139	-				-0.6
2,199	-				-0.3
2,466	+		GFF1351	0.19	+0.0
2,467	-		GFF1351	0.19	+0.7
2,479	-		GFF1351	0.20	+0.2
2,553	+		GFF1351	0.24	-0.0
2,602	+		GFF1351	0.27	+0.0
2,602	+		GFF1351	0.27	-0.5
2,603	-		GFF1351	0.27	+0.3
2,603	-		GFF1351	0.27	-1.3
2,603	-		GFF1351	0.27	+0.4
2,666	+		GFF1351	0.31	+0.7
2,667	-		GFF1351	0.31	-0.1
2,676	-		GFF1351	0.32	+0.5
2,697	+		GFF1351	0.33	-0.1
2,698	-		GFF1351	0.33	+0.7
2,762	-		GFF1351	0.37	-0.4
2,762	-		GFF1351	0.37	+0.1
2,784	+		GFF1351	0.39	-0.3
2,800	+		GFF1351	0.40	+0.1
3,633	-				+0.1
3,767	-				+0.7
3,778	+				-0.1
3,832	-				-0.0
4,064	+		GFF1352	0.20	-0.3
4,065	-		GFF1352	0.20	+0.1
4,116	-		GFF1352	0.24	+0.5
4,247	+		GFF1352	0.34	+0.8
4,555	+		GFF1352	0.58	+0.1
4,586	+		GFF1352	0.60	+0.1
4,673	-		GFF1352	0.67	+0.6
4,673	-		GFF1352	0.67	+0.5
4,673	-		GFF1352	0.67	+0.2
4,747	+		GFF1352	0.73	+0.3