Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1337

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1335 and GFF1336 are separated by 209 nucleotidesGFF1336 and GFF1337 overlap by 14 nucleotidesGFF1337 and GFF1338 are separated by 143 nucleotides GFF1335 - Nickel/cobalt efflux transporter RcnA, at 42,985 to 43,851 GFF1335 GFF1336 - FIG01047778: hypothetical protein, at 44,061 to 44,819 GFF1336 GFF1337 - FIG01045819: hypothetical protein, at 44,806 to 45,318 GFF1337 GFF1338 - Putative outer membrane protein, at 45,462 to 46,538 GFF1338 Position (kb) 44 45 46Strain fitness (log2 ratio) -1 0 1at 43.813 kb on + strandat 43.813 kb on + strandat 43.816 kb on - strandat 43.832 kb on - strandat 43.854 kb on - strandat 44.062 kb on + strandat 44.319 kb on - strand, within GFF1336at 44.321 kb on - strand, within GFF1336at 44.321 kb on - strand, within GFF1336at 44.472 kb on + strand, within GFF1336at 44.473 kb on - strand, within GFF1336at 44.473 kb on - strand, within GFF1336at 44.603 kb on - strand, within GFF1336at 44.641 kb on - strand, within GFF1336at 44.696 kb on - strand, within GFF1336at 44.996 kb on + strand, within GFF1337at 45.018 kb on + strand, within GFF1337at 45.021 kb on + strand, within GFF1337at 45.184 kb on - strand, within GFF1337at 45.226 kb on - strand, within GFF1337at 45.851 kb on - strand, within GFF1338at 45.851 kb on - strand, within GFF1338at 45.863 kb on + strand, within GFF1338

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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43,813 + +0.4
43,813 + -0.3
43,816 - +0.1
43,832 - +0.5
43,854 - -0.0
44,062 + +0.2
44,319 - GFF1336 0.34 -0.3
44,321 - GFF1336 0.34 +0.4
44,321 - GFF1336 0.34 -1.1
44,472 + GFF1336 0.54 +0.3
44,473 - GFF1336 0.54 +0.6
44,473 - GFF1336 0.54 +0.8
44,603 - GFF1336 0.71 -0.5
44,641 - GFF1336 0.76 +0.1
44,696 - GFF1336 0.84 -0.8
44,996 + GFF1337 0.37 -0.1
45,018 + GFF1337 0.41 -0.6
45,021 + GFF1337 0.42 -0.3
45,184 - GFF1337 0.74 -0.2
45,226 - GFF1337 0.82 -0.3
45,851 - GFF1338 0.36 +0.4
45,851 - GFF1338 0.36 -0.0
45,863 + GFF1338 0.37 -0.3

Or see this region's nucleotide sequence