Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF95 and GFF96 are separated by 370 nucleotides GFF96 and GFF97 are separated by 47 nucleotides GFF97 and GFF98 are separated by 26 nucleotides
GFF95 - Putative PTS system IIA component yadI (EC 2.7.1.69), at 79,357 to 79,797
GFF95
GFF96 - Cell wall surface anchor family protein, at 80,168 to 80,707
GFF96
GFF97 - Chaperone protein EcpD, at 80,755 to 81,438
GFF97
GFF98 - FIG100795: Fimbriae usher protein StiC, at 81,465 to 84,011
GFF98
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 80.259 kb on + strand, within GFF96 at 80.260 kb on - strand, within GFF96 at 80.263 kb on + strand, within GFF96 at 80.633 kb on + strand, within GFF96 at 80.702 kb on - strand at 80.702 kb on - strand at 80.702 kb on - strand at 80.886 kb on - strand, within GFF97 at 80.912 kb on + strand, within GFF97 at 81.017 kb on + strand, within GFF97 at 81.021 kb on - strand, within GFF97 at 81.028 kb on - strand, within GFF97 at 81.071 kb on - strand, within GFF97 at 81.114 kb on + strand, within GFF97 at 81.265 kb on + strand, within GFF97 at 81.266 kb on - strand, within GFF97 at 81.266 kb on - strand, within GFF97 at 81.267 kb on + strand, within GFF97 at 81.346 kb on + strand, within GFF97 at 81.347 kb on - strand, within GFF97 at 81.388 kb on - strand at 81.388 kb on - strand at 81.423 kb on + strand at 81.492 kb on + strand at 81.516 kb on - strand at 81.661 kb on - strand at 81.663 kb on + strand at 81.663 kb on + strand at 81.664 kb on - strand at 81.664 kb on - strand at 81.664 kb on - strand at 81.752 kb on - strand, within GFF98 at 81.786 kb on - strand, within GFF98 at 81.896 kb on - strand, within GFF98 at 81.919 kb on - strand, within GFF98 at 81.994 kb on - strand, within GFF98 at 82.056 kb on + strand, within GFF98 at 82.107 kb on + strand, within GFF98 at 82.160 kb on + strand, within GFF98 at 82.247 kb on - strand, within GFF98 at 82.421 kb on + strand, within GFF98
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 80,259 + GFF96 0.17 +0.4 80,260 - GFF96 0.17 -0.7 80,263 + GFF96 0.18 -0.0 80,633 + GFF96 0.86 +0.1 80,702 - -0.4 80,702 - -0.1 80,702 - -0.2 80,886 - GFF97 0.19 -0.8 80,912 + GFF97 0.23 +0.4 81,017 + GFF97 0.38 +0.1 81,021 - GFF97 0.39 -0.3 81,028 - GFF97 0.40 +1.4 81,071 - GFF97 0.46 +0.1 81,114 + GFF97 0.52 +1.1 81,265 + GFF97 0.75 -0.2 81,266 - GFF97 0.75 -0.2 81,266 - GFF97 0.75 +0.1 81,267 + GFF97 0.75 -0.1 81,346 + GFF97 0.86 +0.4 81,347 - GFF97 0.87 -2.0 81,388 - -0.3 81,388 - +0.0 81,423 + +0.1 81,492 + +0.3 81,516 - -0.0 81,661 - +0.6 81,663 + -0.1 81,663 + -0.1 81,664 - -0.7 81,664 - +0.2 81,664 - +1.2 81,752 - GFF98 0.11 -0.0 81,786 - GFF98 0.13 -0.2 81,896 - GFF98 0.17 +0.2 81,919 - GFF98 0.18 -0.4 81,994 - GFF98 0.21 -0.2 82,056 + GFF98 0.23 +0.4 82,107 + GFF98 0.25 -0.9 82,160 + GFF98 0.27 -0.1 82,247 - GFF98 0.31 +0.0 82,421 + GFF98 0.38 +0.3
Or see this region's nucleotide sequence