Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF96

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
79,222	+				+0.2
79,275	-				+0.1
79,295	+				-0.3
79,296	-				+0.0
79,296	-				+0.3
79,296	-				+0.1
79,296	-				-1.0
79,297	+				+0.6
79,385	-				+0.1
79,672	-		GFF95	0.71	-0.0
79,676	-		GFF95	0.72	-0.6
79,676	-		GFF95	0.72	-0.3
80,259	+		GFF96	0.17	+0.4
80,260	-		GFF96	0.17	-0.7
80,263	+		GFF96	0.18	-0.0
80,633	+		GFF96	0.86	+0.1
80,702	-				-0.4
80,702	-				-0.1
80,702	-				-0.2
80,886	-		GFF97	0.19	-0.8
80,912	+		GFF97	0.23	+0.4
81,017	+		GFF97	0.38	+0.1
81,021	-		GFF97	0.39	-0.3
81,028	-		GFF97	0.40	+1.4
81,071	-		GFF97	0.46	+0.1
81,114	+		GFF97	0.52	+1.1
81,265	+		GFF97	0.75	-0.2
81,266	-		GFF97	0.75	-0.2
81,266	-		GFF97	0.75	+0.1
81,267	+		GFF97	0.75	-0.1
81,346	+		GFF97	0.86	+0.4
81,347	-		GFF97	0.87	-2.0
81,388	-				-0.3
81,388	-				+0.0
81,423	+				+0.1
81,492	+				+0.3
81,516	-				-0.0
81,661	-				+0.6
81,663	+				-0.1
81,663	+				-0.1
81,664	-				-0.7
81,664	-				+0.2
81,664	-				+1.2