Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF94

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
77,297	-		GFF92	0.66	-0.3
77,304	-		GFF92	0.67	-0.5
77,342	+		GFF92	0.72	+0.3
77,356	+		GFF92	0.73	-0.4
77,357	-		GFF92	0.73	-0.6
77,405	-		GFF92	0.79	+0.3
77,649	-				+0.2
77,789	+		GFF93	0.29	-0.3
77,813	+		GFF93	0.35	+0.1
77,851	-		GFF93	0.45	-0.2
78,060	+				+0.3
78,131	-				-0.3
78,270	+		GFF94	0.17	-0.2
78,335	-		GFF94	0.22	+0.2
78,348	+		GFF94	0.23	-0.0
78,625	+		GFF94	0.45	-0.4
78,625	+		GFF94	0.45	+0.7
78,625	+		GFF94	0.45	-0.1
78,625	+		GFF94	0.45	-0.3
78,632	-		GFF94	0.46	+0.1
78,632	-		GFF94	0.46	+0.4
78,632	-		GFF94	0.46	-0.1
78,646	+		GFF94	0.47	+0.2
78,759	+		GFF94	0.56	-0.1
78,773	-		GFF94	0.57	+1.7
78,823	+		GFF94	0.62	-0.3
78,823	+		GFF94	0.62	-0.1
78,867	+		GFF94	0.65	+0.3
79,106	-		GFF94	0.85	+0.0
79,108	+		GFF94	0.85	-0.1
79,222	+				+0.2
79,275	-				+0.1
79,295	+				-0.3
79,296	-				+0.0
79,296	-				+0.3
79,296	-				+0.1
79,296	-				-1.0
79,297	+				+0.6
79,385	-				+0.1
79,672	-		GFF95	0.71	-0.0
79,676	-		GFF95	0.72	-0.6
79,676	-		GFF95	0.72	-0.3
80,259	+		GFF96	0.17	+0.4
80,260	-		GFF96	0.17	-0.7
80,263	+		GFF96	0.18	-0.0