Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF68 and GFF69 are separated by 107 nucleotides GFF69 and GFF70 overlap by 1 nucleotides GFF70 and GFF71 overlap by 1 nucleotides
GFF68 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 50,598 to 51,878
GFF68
GFF69 - Uncharacterized protein YadU in stf fimbrial cluster, at 51,986 to 52,825
GFF69
GFF70 - Minor fimbrial subunit StfG, at 52,825 to 53,355
GFF70
GFF71 - Minor fimbrial subunit StfF, at 53,355 to 53,831
GFF71
Position (kb) 51
52
53 Strain fitness (log2 ratio) -1
0
1 at 51.902 kb on - strand at 52.001 kb on - strand at 52.003 kb on + strand at 52.003 kb on + strand at 52.005 kb on + strand at 52.005 kb on + strand at 52.069 kb on + strand at 52.156 kb on + strand, within GFF69 at 52.160 kb on - strand, within GFF69 at 52.239 kb on + strand, within GFF69 at 52.239 kb on + strand, within GFF69 at 52.239 kb on + strand, within GFF69 at 52.240 kb on - strand, within GFF69 at 52.244 kb on - strand, within GFF69 at 52.247 kb on + strand, within GFF69 at 52.248 kb on - strand, within GFF69 at 52.248 kb on - strand, within GFF69 at 52.327 kb on + strand, within GFF69 at 52.449 kb on + strand, within GFF69 at 52.449 kb on + strand, within GFF69 at 52.449 kb on + strand, within GFF69 at 52.559 kb on + strand, within GFF69 at 52.560 kb on - strand, within GFF69 at 52.560 kb on - strand, within GFF69 at 52.648 kb on - strand, within GFF69 at 52.648 kb on - strand, within GFF69 at 52.650 kb on + strand, within GFF69 at 52.651 kb on - strand, within GFF69 at 52.714 kb on + strand, within GFF69 at 52.719 kb on + strand, within GFF69 at 52.720 kb on - strand, within GFF69 at 52.720 kb on - strand, within GFF69 at 52.723 kb on - strand, within GFF69 at 52.828 kb on + strand at 52.828 kb on + strand at 53.031 kb on - strand, within GFF70 at 53.034 kb on + strand, within GFF70 at 53.034 kb on + strand, within GFF70 at 53.036 kb on + strand, within GFF70 at 53.146 kb on - strand, within GFF70 at 53.490 kb on - strand, within GFF71 at 53.730 kb on - strand, within GFF71
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 51,902 - +0.4 52,001 - -1.1 52,003 + +0.5 52,003 + +0.7 52,005 + -0.4 52,005 + -0.3 52,069 + -0.3 52,156 + GFF69 0.20 +0.2 52,160 - GFF69 0.21 +0.5 52,239 + GFF69 0.30 -0.0 52,239 + GFF69 0.30 -0.1 52,239 + GFF69 0.30 -0.1 52,240 - GFF69 0.30 +0.5 52,244 - GFF69 0.31 -0.5 52,247 + GFF69 0.31 +0.3 52,248 - GFF69 0.31 -0.3 52,248 - GFF69 0.31 +0.4 52,327 + GFF69 0.41 -1.1 52,449 + GFF69 0.55 -0.3 52,449 + GFF69 0.55 -0.2 52,449 + GFF69 0.55 -1.2 52,559 + GFF69 0.68 -0.4 52,560 - GFF69 0.68 -0.0 52,560 - GFF69 0.68 -0.5 52,648 - GFF69 0.79 -0.0 52,648 - GFF69 0.79 -0.3 52,650 + GFF69 0.79 +0.4 52,651 - GFF69 0.79 +0.1 52,714 + GFF69 0.87 -0.8 52,719 + GFF69 0.87 -0.5 52,720 - GFF69 0.87 +0.2 52,720 - GFF69 0.87 -0.1 52,723 - GFF69 0.88 +0.5 52,828 + +0.3 52,828 + -0.5 53,031 - GFF70 0.39 +0.1 53,034 + GFF70 0.39 +0.3 53,034 + GFF70 0.39 -0.2 53,036 + GFF70 0.40 +0.0 53,146 - GFF70 0.60 -0.0 53,490 - GFF71 0.28 -0.1 53,730 - GFF71 0.79 +0.6
Or see this region's nucleotide sequence