Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF670 and GFF671 are separated by 86 nucleotides GFF671 and GFF672 overlap by 4 nucleotides
GFF670 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 25,858 to 27,147
GFF670
GFF671 - Biotin synthase (EC 2.8.1.6), at 27,234 to 28,274
GFF671
GFF672 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 28,271 to 29,428
GFF672
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1 at 26.235 kb on + strand, within GFF670 at 26.236 kb on - strand, within GFF670 at 26.408 kb on - strand, within GFF670 at 26.451 kb on + strand, within GFF670 at 26.452 kb on - strand, within GFF670 at 26.452 kb on - strand, within GFF670 at 26.458 kb on - strand, within GFF670 at 26.480 kb on + strand, within GFF670 at 26.480 kb on + strand, within GFF670 at 26.482 kb on + strand, within GFF670 at 26.482 kb on + strand, within GFF670 at 26.482 kb on + strand, within GFF670 at 26.483 kb on - strand, within GFF670 at 26.483 kb on - strand, within GFF670 at 26.483 kb on - strand, within GFF670 at 26.483 kb on - strand, within GFF670 at 26.869 kb on - strand, within GFF670 at 26.971 kb on - strand, within GFF670 at 26.971 kb on - strand, within GFF670 at 26.973 kb on - strand, within GFF670 at 27.069 kb on - strand at 27.099 kb on - strand at 27.217 kb on + strand at 27.353 kb on - strand, within GFF671 at 27.362 kb on + strand, within GFF671 at 27.363 kb on - strand, within GFF671 at 27.404 kb on + strand, within GFF671 at 27.405 kb on - strand, within GFF671 at 27.467 kb on - strand, within GFF671 at 27.476 kb on - strand, within GFF671 at 27.681 kb on + strand, within GFF671 at 27.681 kb on + strand, within GFF671 at 27.723 kb on - strand, within GFF671 at 27.738 kb on - strand, within GFF671 at 27.741 kb on + strand, within GFF671 at 27.741 kb on + strand, within GFF671 at 27.742 kb on - strand, within GFF671 at 27.788 kb on + strand, within GFF671 at 27.789 kb on - strand, within GFF671 at 27.789 kb on - strand, within GFF671 at 28.005 kb on + strand, within GFF671 at 28.005 kb on + strand, within GFF671 at 28.151 kb on + strand, within GFF671 at 28.254 kb on + strand at 28.255 kb on - strand at 28.324 kb on + strand at 28.341 kb on - strand at 28.341 kb on - strand at 28.391 kb on + strand, within GFF672 at 28.391 kb on + strand, within GFF672 at 28.392 kb on - strand, within GFF672 at 28.397 kb on - strand, within GFF672 at 28.425 kb on + strand, within GFF672 at 28.585 kb on + strand, within GFF672 at 28.802 kb on + strand, within GFF672 at 28.802 kb on + strand, within GFF672 at 28.802 kb on + strand, within GFF672 at 28.802 kb on + strand, within GFF672 at 28.803 kb on - strand, within GFF672 at 28.803 kb on - strand, within GFF672 at 28.803 kb on - strand, within GFF672
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 26,235 + GFF670 0.29 +0.5 26,236 - GFF670 0.29 +0.0 26,408 - GFF670 0.43 -0.8 26,451 + GFF670 0.46 +0.5 26,452 - GFF670 0.46 -0.5 26,452 - GFF670 0.46 +0.3 26,458 - GFF670 0.47 -0.0 26,480 + GFF670 0.48 +0.4 26,480 + GFF670 0.48 -0.1 26,482 + GFF670 0.48 +0.3 26,482 + GFF670 0.48 +0.3 26,482 + GFF670 0.48 +0.4 26,483 - GFF670 0.48 +0.1 26,483 - GFF670 0.48 +0.3 26,483 - GFF670 0.48 -0.7 26,483 - GFF670 0.48 -0.4 26,869 - GFF670 0.78 -0.3 26,971 - GFF670 0.86 +0.4 26,971 - GFF670 0.86 -0.0 26,973 - GFF670 0.86 +0.2 27,069 - -1.4 27,099 - -0.3 27,217 + -0.3 27,353 - GFF671 0.11 -0.1 27,362 + GFF671 0.12 -0.3 27,363 - GFF671 0.12 +0.9 27,404 + GFF671 0.16 -0.2 27,405 - GFF671 0.16 -0.3 27,467 - GFF671 0.22 +0.9 27,476 - GFF671 0.23 -0.6 27,681 + GFF671 0.43 -0.1 27,681 + GFF671 0.43 +0.1 27,723 - GFF671 0.47 -0.4 27,738 - GFF671 0.48 -1.1 27,741 + GFF671 0.49 +0.2 27,741 + GFF671 0.49 -0.1 27,742 - GFF671 0.49 -0.3 27,788 + GFF671 0.53 +0.5 27,789 - GFF671 0.53 +1.0 27,789 - GFF671 0.53 -1.0 28,005 + GFF671 0.74 -0.1 28,005 + GFF671 0.74 -0.4 28,151 + GFF671 0.88 +0.1 28,254 + -0.2 28,255 - -0.2 28,324 + -0.1 28,341 - -0.3 28,341 - +0.5 28,391 + GFF672 0.10 +0.4 28,391 + GFF672 0.10 +1.6 28,392 - GFF672 0.10 +0.4 28,397 - GFF672 0.11 -1.2 28,425 + GFF672 0.13 +0.6 28,585 + GFF672 0.27 +0.7 28,802 + GFF672 0.46 -0.0 28,802 + GFF672 0.46 -0.7 28,802 + GFF672 0.46 +1.1 28,802 + GFF672 0.46 -0.5 28,803 - GFF672 0.46 -0.4 28,803 - GFF672 0.46 -0.1 28,803 - GFF672 0.46 +0.3
Or see this region's nucleotide sequence