Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF648 and GFF649 are separated by 223 nucleotides GFF649 and GFF650 overlap by 7 nucleotides
GFF648 - Phosphoglycerate mutase (EC 5.4.2.1), at 3,427 to 4,179
GFF648
GFF649 - Aldose 1-epimerase (EC 5.1.3.3), at 4,403 to 5,443
GFF649
GFF650 - Galactokinase (EC 2.7.1.6), at 5,437 to 6,585
GFF650
Position (kb) 4
5
6 Strain fitness (log2 ratio) -1
0
1 at 3.404 kb on - strand at 3.404 kb on - strand at 3.404 kb on - strand at 3.497 kb on + strand at 3.498 kb on - strand at 3.498 kb on - strand at 3.533 kb on + strand, within GFF648 at 3.533 kb on + strand, within GFF648 at 3.592 kb on - strand, within GFF648 at 3.970 kb on + strand, within GFF648 at 3.971 kb on - strand, within GFF648 at 4.103 kb on + strand, within GFF648 at 4.172 kb on - strand at 4.192 kb on - strand at 4.194 kb on - strand at 4.194 kb on - strand at 4.194 kb on - strand at 4.404 kb on + strand at 4.441 kb on - strand at 4.462 kb on + strand at 4.621 kb on - strand, within GFF649 at 4.874 kb on - strand, within GFF649 at 4.874 kb on - strand, within GFF649 at 4.915 kb on - strand, within GFF649 at 4.981 kb on + strand, within GFF649 at 4.981 kb on + strand, within GFF649 at 4.981 kb on + strand, within GFF649 at 4.982 kb on - strand, within GFF649 at 5.188 kb on + strand, within GFF649 at 5.191 kb on - strand, within GFF649 at 5.470 kb on + strand at 5.471 kb on - strand at 5.471 kb on - strand at 5.474 kb on + strand at 5.650 kb on + strand, within GFF650 at 5.719 kb on - strand, within GFF650 at 5.783 kb on - strand, within GFF650 at 5.783 kb on - strand, within GFF650 at 5.783 kb on - strand, within GFF650 at 5.913 kb on + strand, within GFF650 at 5.916 kb on + strand, within GFF650 at 5.916 kb on + strand, within GFF650 at 5.917 kb on - strand, within GFF650 at 5.919 kb on - strand, within GFF650 at 6.395 kb on - strand, within GFF650 at 6.423 kb on + strand, within GFF650
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 3,404 - -0.0 3,404 - +0.2 3,404 - +0.1 3,497 + +0.2 3,498 - +0.5 3,498 - +0.0 3,533 + GFF648 0.14 +0.6 3,533 + GFF648 0.14 -0.2 3,592 - GFF648 0.22 -0.8 3,970 + GFF648 0.72 -0.5 3,971 - GFF648 0.72 -0.3 4,103 + GFF648 0.90 -0.2 4,172 - -0.1 4,192 - +0.3 4,194 - +0.4 4,194 - +0.2 4,194 - -0.4 4,404 + -1.2 4,441 - +0.3 4,462 + +0.0 4,621 - GFF649 0.21 -0.1 4,874 - GFF649 0.45 -0.3 4,874 - GFF649 0.45 +0.7 4,915 - GFF649 0.49 +0.1 4,981 + GFF649 0.56 +1.3 4,981 + GFF649 0.56 -0.6 4,981 + GFF649 0.56 +0.2 4,982 - GFF649 0.56 +0.3 5,188 + GFF649 0.75 -0.4 5,191 - GFF649 0.76 +0.2 5,470 + +0.2 5,471 - +0.4 5,471 - -0.3 5,474 + -0.6 5,650 + GFF650 0.19 +0.0 5,719 - GFF650 0.25 +0.3 5,783 - GFF650 0.30 -0.2 5,783 - GFF650 0.30 -0.0 5,783 - GFF650 0.30 +0.4 5,913 + GFF650 0.41 -0.6 5,916 + GFF650 0.42 +0.7 5,916 + GFF650 0.42 -0.1 5,917 - GFF650 0.42 +0.7 5,919 - GFF650 0.42 +0.1 6,395 - GFF650 0.83 +0.3 6,423 + GFF650 0.86 +0.0
Or see this region's nucleotide sequence