Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF562 and GFF563 overlap by 4 nucleotides GFF563 and GFF564 are separated by 53 nucleotides GFF564 and GFF565 are separated by 15 nucleotides
GFF562 - Puative phophotriesterase, at 292,661 to 293,695
GFF562
GFF563 - Putative inner membrane protein, at 293,692 to 294,663
GFF563
GFF564 - FIG074102: hypothetical protein, at 294,717 to 295,478
GFF564
GFF565 - Putative ribokinase, at 295,494 to 296,708
GFF565
Position (kb) 293
294
295 Strain fitness (log2 ratio) -1
0
1 at 292.694 kb on - strand at 292.712 kb on - strand at 292.741 kb on - strand at 292.823 kb on + strand, within GFF562 at 292.953 kb on - strand, within GFF562 at 292.972 kb on + strand, within GFF562 at 293.104 kb on + strand, within GFF562 at 293.129 kb on - strand, within GFF562 at 293.129 kb on - strand, within GFF562 at 293.162 kb on - strand, within GFF562 at 293.254 kb on + strand, within GFF562 at 293.287 kb on + strand, within GFF562 at 293.288 kb on - strand, within GFF562 at 293.319 kb on + strand, within GFF562 at 293.443 kb on + strand, within GFF562 at 293.580 kb on + strand, within GFF562 at 293.580 kb on + strand, within GFF562 at 293.673 kb on - strand at 293.735 kb on + strand at 293.802 kb on - strand, within GFF563 at 293.896 kb on + strand, within GFF563 at 294.061 kb on - strand, within GFF563 at 294.061 kb on - strand, within GFF563 at 294.061 kb on - strand, within GFF563 at 294.532 kb on + strand, within GFF563 at 294.547 kb on - strand, within GFF563 at 294.647 kb on + strand at 294.648 kb on - strand at 294.676 kb on - strand at 294.780 kb on - strand at 295.478 kb on + strand at 295.502 kb on + strand at 295.536 kb on - strand at 295.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 292,694 - +0.3 292,712 - +0.1 292,741 - +0.3 292,823 + GFF562 0.16 -0.2 292,953 - GFF562 0.28 -0.1 292,972 + GFF562 0.30 -0.6 293,104 + GFF562 0.43 +0.0 293,129 - GFF562 0.45 +0.3 293,129 - GFF562 0.45 -0.5 293,162 - GFF562 0.48 -1.1 293,254 + GFF562 0.57 +0.2 293,287 + GFF562 0.60 +0.5 293,288 - GFF562 0.61 -0.5 293,319 + GFF562 0.64 -0.3 293,443 + GFF562 0.76 +0.3 293,580 + GFF562 0.89 -0.3 293,580 + GFF562 0.89 +0.9 293,673 - -0.6 293,735 + +0.6 293,802 - GFF563 0.11 -1.1 293,896 + GFF563 0.21 -0.1 294,061 - GFF563 0.38 +0.6 294,061 - GFF563 0.38 +0.1 294,061 - GFF563 0.38 -0.5 294,532 + GFF563 0.86 -0.6 294,547 - GFF563 0.88 -0.0 294,647 + +0.5 294,648 - -0.6 294,676 - -0.0 294,780 - -0.2 295,478 + -0.8 295,502 + +0.3 295,536 - -0.1 295,568 - +0.4
Or see this region's nucleotide sequence