Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4867 and GFF4868 overlap by 1 nucleotides GFF4868 and GFF4869 are separated by 272 nucleotides GFF4869 and GFF4870 are separated by 51 nucleotides GFF4870 and GFF4871 are separated by 109 nucleotides
GFF4867 - Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA, at 165,921 to 167,126
GFF4867
GFF4868 - Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE, at 167,126 to 167,569
GFF4868
GFF4869 - FIG00761799: membrane protein, at 167,842 to 168,756
GFF4869
GFF4870 - CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway, at 168,808 to 169,614
GFF4870
GFF4871 - Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-), at 169,724 to 170,821
GFF4871
Position (kb) 167
168
169 Strain fitness (log2 ratio) -1
0
1 at 166.963 kb on - strand, within GFF4867 at 167.057 kb on + strand at 167.057 kb on + strand at 167.124 kb on + strand at 167.141 kb on + strand at 167.488 kb on - strand, within GFF4868 at 167.582 kb on - strand at 168.302 kb on + strand, within GFF4869 at 168.351 kb on - strand, within GFF4869 at 168.351 kb on - strand, within GFF4869 at 168.510 kb on - strand, within GFF4869 at 168.672 kb on - strand at 169.024 kb on - strand, within GFF4870 at 169.053 kb on + strand, within GFF4870 at 169.169 kb on - strand, within GFF4870 at 169.180 kb on - strand, within GFF4870 at 169.181 kb on + strand, within GFF4870 at 169.244 kb on + strand, within GFF4870 at 169.244 kb on + strand, within GFF4870 at 169.245 kb on - strand, within GFF4870 at 169.249 kb on - strand, within GFF4870 at 169.601 kb on - strand at 169.601 kb on - strand at 169.614 kb on + strand at 169.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 166,963 - GFF4867 0.86 +0.6 167,057 + -0.2 167,057 + +0.1 167,124 + +0.4 167,141 + +0.2 167,488 - GFF4868 0.82 +0.0 167,582 - -0.4 168,302 + GFF4869 0.50 -0.3 168,351 - GFF4869 0.56 -0.0 168,351 - GFF4869 0.56 -0.7 168,510 - GFF4869 0.73 -0.4 168,672 - -0.1 169,024 - GFF4870 0.27 +0.2 169,053 + GFF4870 0.30 +0.5 169,169 - GFF4870 0.45 +0.4 169,180 - GFF4870 0.46 +0.1 169,181 + GFF4870 0.46 +0.5 169,244 + GFF4870 0.54 +0.1 169,244 + GFF4870 0.54 +0.1 169,245 - GFF4870 0.54 +0.4 169,249 - GFF4870 0.55 +0.3 169,601 - -1.5 169,601 - -0.5 169,614 + -0.4 169,615 - +0.3
Or see this region's nucleotide sequence