Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4727 and GFF4728 overlap by 4 nucleotides GFF4728 and GFF4729 overlap by 4 nucleotides GFF4729 and GFF4730 overlap by 10 nucleotides
GFF4727 - Manganese ABC transporter, periplasmic-binding protein SitA, at 36,151 to 37,068
GFF4727
GFF4728 - Manganese ABC transporter, ATP-binding protein SitB, at 37,065 to 37,886
GFF4728
GFF4729 - Manganese ABC transporter, inner membrane permease protein SitC, at 37,883 to 38,743
GFF4729
GFF4730 - Manganese ABC transporter, inner membrane permease protein SitD, at 38,734 to 39,582
GFF4730
Position (kb) 37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.162 kb on - strand at 36.259 kb on - strand, within GFF4727 at 36.347 kb on - strand, within GFF4727 at 36.370 kb on - strand, within GFF4727 at 36.393 kb on + strand, within GFF4727 at 36.439 kb on + strand, within GFF4727 at 36.507 kb on - strand, within GFF4727 at 36.514 kb on + strand, within GFF4727 at 36.601 kb on + strand, within GFF4727 at 36.626 kb on - strand, within GFF4727 at 36.627 kb on + strand, within GFF4727 at 36.648 kb on + strand, within GFF4727 at 36.748 kb on + strand, within GFF4727 at 36.952 kb on + strand, within GFF4727 at 36.994 kb on + strand at 36.995 kb on - strand at 36.995 kb on - strand at 37.178 kb on - strand, within GFF4728 at 37.306 kb on - strand, within GFF4728 at 37.396 kb on + strand, within GFF4728 at 37.585 kb on + strand, within GFF4728 at 37.695 kb on - strand, within GFF4728 at 38.030 kb on - strand, within GFF4729 at 38.117 kb on - strand, within GFF4729 at 38.171 kb on - strand, within GFF4729 at 38.441 kb on - strand, within GFF4729 at 38.596 kb on + strand, within GFF4729 at 38.597 kb on - strand, within GFF4729 at 38.601 kb on - strand, within GFF4729 at 38.775 kb on + strand at 38.825 kb on + strand, within GFF4730 at 38.825 kb on + strand, within GFF4730 at 38.847 kb on - strand, within GFF4730
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 36,162 - +0.3 36,259 - GFF4727 0.12 +0.7 36,347 - GFF4727 0.21 +1.3 36,370 - GFF4727 0.24 -0.1 36,393 + GFF4727 0.26 +0.8 36,439 + GFF4727 0.31 +2.0 36,507 - GFF4727 0.39 +0.0 36,514 + GFF4727 0.40 +0.2 36,601 + GFF4727 0.49 +0.0 36,626 - GFF4727 0.52 -1.0 36,627 + GFF4727 0.52 -0.7 36,648 + GFF4727 0.54 -0.0 36,748 + GFF4727 0.65 +0.9 36,952 + GFF4727 0.87 -0.4 36,994 + -0.4 36,995 - -0.4 36,995 - -0.4 37,178 - GFF4728 0.14 -0.7 37,306 - GFF4728 0.29 -1.2 37,396 + GFF4728 0.40 +0.2 37,585 + GFF4728 0.63 +0.8 37,695 - GFF4728 0.77 +0.1 38,030 - GFF4729 0.17 +0.6 38,117 - GFF4729 0.27 +0.2 38,171 - GFF4729 0.33 +0.3 38,441 - GFF4729 0.65 +0.3 38,596 + GFF4729 0.83 +0.8 38,597 - GFF4729 0.83 -1.1 38,601 - GFF4729 0.83 -2.2 38,775 + -0.0 38,825 + GFF4730 0.11 -0.3 38,825 + GFF4730 0.11 +0.2 38,847 - GFF4730 0.13 +0.2
Or see this region's nucleotide sequence