Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4685 and GFF4686 are separated by 89 nucleotides GFF4686 and GFF4687 are separated by 9 nucleotides GFF4687 and GFF4688 are separated by 59 nucleotides GFF4688 and GFF4689 are separated by 71 nucleotides
GFF4685 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 14,352 to 14,885
GFF4685
GFF4686 - Phage minor tail protein, at 14,975 to 15,670
GFF4686
GFF4687 - Phage tail assembly protein, at 15,680 to 16,417
GFF4687
GFF4688 - Phage tail assembly protein I, at 16,477 to 17,019
GFF4688
GFF4689 - Phage tail fiber protein, at 17,091 to 19,538
GFF4689
Position (kb) 15
16
17 Strain fitness (log2 ratio) -1
0
1 at 14.808 kb on + strand, within GFF4685 at 14.871 kb on + strand at 14.891 kb on - strand at 14.939 kb on - strand at 14.972 kb on + strand at 14.974 kb on + strand at 14.974 kb on + strand at 14.974 kb on + strand at 14.985 kb on + strand at 15.300 kb on - strand, within GFF4686 at 15.300 kb on - strand, within GFF4686 at 15.380 kb on - strand, within GFF4686 at 15.418 kb on + strand, within GFF4686 at 15.424 kb on + strand, within GFF4686 at 15.472 kb on + strand, within GFF4686 at 15.619 kb on + strand at 15.668 kb on + strand at 15.817 kb on + strand, within GFF4687 at 15.818 kb on - strand, within GFF4687 at 15.818 kb on - strand, within GFF4687 at 15.919 kb on + strand, within GFF4687 at 15.930 kb on + strand, within GFF4687 at 15.972 kb on + strand, within GFF4687 at 15.972 kb on + strand, within GFF4687 at 15.972 kb on + strand, within GFF4687 at 15.976 kb on + strand, within GFF4687 at 16.037 kb on + strand, within GFF4687 at 16.038 kb on - strand, within GFF4687 at 16.058 kb on + strand, within GFF4687 at 16.078 kb on + strand, within GFF4687 at 16.120 kb on + strand, within GFF4687 at 16.131 kb on - strand, within GFF4687 at 16.305 kb on - strand, within GFF4687 at 16.305 kb on - strand, within GFF4687 at 16.436 kb on + strand at 16.586 kb on + strand, within GFF4688 at 16.593 kb on + strand, within GFF4688 at 17.021 kb on - strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.117 kb on + strand at 17.117 kb on + strand at 17.118 kb on - strand at 17.270 kb on + strand at 17.271 kb on - strand at 17.271 kb on - strand at 17.271 kb on - strand at 17.292 kb on + strand at 17.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 14,808 + GFF4685 0.85 -0.5 14,871 + -0.5 14,891 - +0.7 14,939 - -0.1 14,972 + +0.2 14,974 + +0.7 14,974 + +0.3 14,974 + -0.4 14,985 + -0.1 15,300 - GFF4686 0.47 -0.2 15,300 - GFF4686 0.47 -0.1 15,380 - GFF4686 0.58 +1.1 15,418 + GFF4686 0.64 +1.0 15,424 + GFF4686 0.65 +0.2 15,472 + GFF4686 0.71 +0.1 15,619 + -1.0 15,668 + +0.4 15,817 + GFF4687 0.19 +0.3 15,818 - GFF4687 0.19 +1.0 15,818 - GFF4687 0.19 +0.1 15,919 + GFF4687 0.32 +0.1 15,930 + GFF4687 0.34 +0.6 15,972 + GFF4687 0.40 +1.2 15,972 + GFF4687 0.40 -0.1 15,972 + GFF4687 0.40 +1.0 15,976 + GFF4687 0.40 -1.7 16,037 + GFF4687 0.48 +0.2 16,038 - GFF4687 0.49 -0.7 16,058 + GFF4687 0.51 -0.0 16,078 + GFF4687 0.54 +0.5 16,120 + GFF4687 0.60 -0.1 16,131 - GFF4687 0.61 -0.6 16,305 - GFF4687 0.85 +1.6 16,305 - GFF4687 0.85 +0.1 16,436 + -0.8 16,586 + GFF4688 0.20 +0.6 16,593 + GFF4688 0.21 +1.2 17,021 - +0.5 17,077 - +0.2 17,077 - +0.7 17,117 + -0.3 17,117 + +0.6 17,118 - +1.0 17,270 + +0.5 17,271 - -0.2 17,271 - +0.6 17,271 - -0.4 17,292 + +0.2 17,293 - -0.6
Or see this region's nucleotide sequence