Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4682 and GFF4683 overlap by 4 nucleotides GFF4683 and GFF4684 are separated by 98 nucleotides GFF4684 and GFF4685 are separated by 116 nucleotides
GFF4682 - Phage tail length tape-measure protein 1, at 10,224 to 13,310
GFF4682
GFF4683 - Phage minor tail protein, at 13,307 to 13,639
GFF4683
GFF4684 - Attachment invasion locus protein precursor, at 13,738 to 14,235
GFF4684
GFF4685 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 14,352 to 14,885
GFF4685
Position (kb) 13
14 Strain fitness (log2 ratio) -1
0
1 at 12.534 kb on + strand, within GFF4682 at 12.534 kb on + strand, within GFF4682 at 12.879 kb on - strand, within GFF4682 at 12.928 kb on - strand, within GFF4682 at 12.975 kb on + strand, within GFF4682 at 13.010 kb on + strand at 13.083 kb on - strand at 13.239 kb on - strand at 13.544 kb on + strand, within GFF4683 at 13.555 kb on + strand, within GFF4683 at 13.666 kb on + strand at 13.782 kb on + strand at 13.840 kb on + strand, within GFF4684 at 13.941 kb on + strand, within GFF4684 at 13.942 kb on - strand, within GFF4684 at 13.945 kb on + strand, within GFF4684 at 13.946 kb on - strand, within GFF4684 at 13.965 kb on + strand, within GFF4684 at 13.969 kb on + strand, within GFF4684 at 13.976 kb on - strand, within GFF4684 at 13.977 kb on + strand, within GFF4684 at 13.997 kb on - strand, within GFF4684 at 13.998 kb on + strand, within GFF4684 at 14.039 kb on - strand, within GFF4684 at 14.088 kb on + strand, within GFF4684 at 14.187 kb on + strand at 14.343 kb on - strand at 14.343 kb on - strand at 14.565 kb on - strand, within GFF4685 at 14.566 kb on + strand, within GFF4685 at 14.636 kb on + strand, within GFF4685
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 12,534 + GFF4682 0.75 -0.0 12,534 + GFF4682 0.75 -0.2 12,879 - GFF4682 0.86 +0.2 12,928 - GFF4682 0.88 +1.1 12,975 + GFF4682 0.89 -0.7 13,010 + -0.1 13,083 - -0.6 13,239 - +0.1 13,544 + GFF4683 0.71 -0.5 13,555 + GFF4683 0.74 -1.0 13,666 + -0.4 13,782 + +0.0 13,840 + GFF4684 0.20 +0.1 13,941 + GFF4684 0.41 +0.3 13,942 - GFF4684 0.41 +0.1 13,945 + GFF4684 0.42 -0.3 13,946 - GFF4684 0.42 -0.9 13,965 + GFF4684 0.46 -0.7 13,969 + GFF4684 0.46 +0.2 13,976 - GFF4684 0.48 -0.3 13,977 + GFF4684 0.48 +0.5 13,997 - GFF4684 0.52 +0.9 13,998 + GFF4684 0.52 +0.4 14,039 - GFF4684 0.60 +0.1 14,088 + GFF4684 0.70 -0.3 14,187 + -0.2 14,343 - +0.1 14,343 - +0.5 14,565 - GFF4685 0.40 +0.7 14,566 + GFF4685 0.40 -0.7 14,636 + GFF4685 0.53 +0.0
Or see this region's nucleotide sequence