Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4669

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4669 and GFF4670 are separated by 207 nucleotidesGFF4670 and GFF4671 are separated by 61 nucleotides GFF4669 - Phage outer membrane lytic protein Rz; Endopeptidase (EC 3.4.-.-), at 9 to 473 GFF4669 GFF4670 - FIG01049225: hypothetical protein, at 681 to 1,214 GFF4670 GFF4671 - Phage terminase, large subunit, at 1,276 to 3,309 GFF4671 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1at 0.178 kb on - strand, within GFF4669at 0.458 kb on + strandat 0.660 kb on - strandat 0.709 kb on + strandat 0.800 kb on + strand, within GFF4670at 0.804 kb on - strand, within GFF4670at 0.935 kb on + strand, within GFF4670at 1.137 kb on + strand, within GFF4670at 1.138 kb on - strand, within GFF4670at 1.212 kb on + strandat 1.363 kb on + strandat 1.363 kb on + strandat 1.363 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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178 - GFF4669 0.36 +0.1
458 + -0.6
660 - +0.8
709 + -0.2
800 + GFF4670 0.22 -0.5
804 - GFF4670 0.23 -0.2
935 + GFF4670 0.48 -1.9
1,137 + GFF4670 0.85 -0.0
1,138 - GFF4670 0.86 -0.8
1,212 + -0.8
1,363 + -0.3
1,363 + +0.0
1,363 + -0.6

Or see this region's nucleotide sequence