Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4635 and GFF4636 overlap by 7 nucleotides GFF4636 and GFF4637 overlap by 1 nucleotides
GFF4635 - Succinate dehydrogenase cytochrome b-556 subunit, at 428,638 to 428,925
GFF4635
GFF4636 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 428,919 to 429,266
GFF4636
GFF4637 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 429,266 to 431,032
GFF4637
Position (kb) 428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 428.016 kb on + strand at 428.033 kb on + strand at 428.043 kb on - strand at 428.051 kb on + strand at 428.084 kb on + strand at 428.085 kb on - strand at 428.085 kb on - strand at 428.140 kb on - strand at 428.265 kb on + strand at 428.265 kb on + strand at 428.325 kb on - strand at 428.354 kb on + strand at 428.389 kb on - strand at 428.663 kb on + strand at 428.666 kb on + strand at 428.666 kb on + strand at 428.667 kb on - strand, within GFF4635 at 428.782 kb on + strand, within GFF4635 at 428.828 kb on - strand, within GFF4635 at 428.956 kb on + strand, within GFF4636 at 428.956 kb on + strand, within GFF4636 at 429.003 kb on + strand, within GFF4636 at 429.003 kb on + strand, within GFF4636 at 429.012 kb on + strand, within GFF4636 at 429.229 kb on - strand, within GFF4636 at 429.229 kb on - strand, within GFF4636 at 429.237 kb on + strand at 429.237 kb on + strand at 429.473 kb on + strand, within GFF4637 at 429.474 kb on - strand, within GFF4637 at 429.474 kb on - strand, within GFF4637 at 429.524 kb on + strand, within GFF4637 at 429.524 kb on + strand, within GFF4637 at 429.525 kb on - strand, within GFF4637 at 429.526 kb on + strand, within GFF4637 at 429.527 kb on - strand, within GFF4637 at 429.527 kb on - strand, within GFF4637 at 429.527 kb on - strand, within GFF4637 at 429.604 kb on + strand, within GFF4637 at 429.604 kb on + strand, within GFF4637 at 429.608 kb on + strand, within GFF4637 at 429.702 kb on + strand, within GFF4637 at 429.714 kb on - strand, within GFF4637 at 429.714 kb on - strand, within GFF4637 at 429.758 kb on + strand, within GFF4637 at 429.890 kb on + strand, within GFF4637 at 430.253 kb on - strand, within GFF4637
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 428,016 + -1.0 428,033 + -0.8 428,043 - -0.4 428,051 + -0.4 428,084 + -0.1 428,085 - -0.7 428,085 - -0.5 428,140 - +0.3 428,265 + -0.9 428,265 + -0.7 428,325 - -1.4 428,354 + -2.2 428,389 - -1.0 428,663 + -2.7 428,666 + -1.8 428,666 + -1.3 428,667 - GFF4635 0.10 -0.1 428,782 + GFF4635 0.50 -0.8 428,828 - GFF4635 0.66 -1.1 428,956 + GFF4636 0.11 -0.8 428,956 + GFF4636 0.11 -1.5 429,003 + GFF4636 0.24 -1.4 429,003 + GFF4636 0.24 -1.4 429,012 + GFF4636 0.27 -2.3 429,229 - GFF4636 0.89 +0.5 429,229 - GFF4636 0.89 -3.1 429,237 + -1.2 429,237 + -1.4 429,473 + GFF4637 0.12 -0.6 429,474 - GFF4637 0.12 -1.4 429,474 - GFF4637 0.12 -1.3 429,524 + GFF4637 0.15 -1.7 429,524 + GFF4637 0.15 -2.2 429,525 - GFF4637 0.15 -1.7 429,526 + GFF4637 0.15 -2.4 429,527 - GFF4637 0.15 -1.1 429,527 - GFF4637 0.15 -1.1 429,527 - GFF4637 0.15 +0.1 429,604 + GFF4637 0.19 -2.1 429,604 + GFF4637 0.19 -1.6 429,608 + GFF4637 0.19 -1.5 429,702 + GFF4637 0.25 -1.5 429,714 - GFF4637 0.25 -1.9 429,714 - GFF4637 0.25 -2.0 429,758 + GFF4637 0.28 -0.1 429,890 + GFF4637 0.35 -1.6 430,253 - GFF4637 0.56 -1.5
Or see this region's nucleotide sequence