Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4404 and GFF4405 are separated by 109 nucleotides GFF4405 and GFF4406 are separated by 0 nucleotides GFF4406 and GFF4407 overlap by 4 nucleotides GFF4407 and GFF4408 are separated by 146 nucleotides GFF4408 and GFF4409 overlap by 14 nucleotides
GFF4404 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 188,159 to 190,660
GFF4404
GFF4405 - HTH-type transcriptional regulator cueR, at 190,770 to 191,186
GFF4405
GFF4406 - Putative activity regulator of membrane protease YbbK, at 191,187 to 191,639
GFF4406
GFF4407 - Putative stomatin/prohibitin-family membrane protease subunit YbbK, at 191,636 to 192,553
GFF4407
GFF4408 - YbbL ABC transporter ATP-binding protein, at 192,700 to 193,377
GFF4408
GFF4409 - YbbM seven transmembrane helix protein, at 193,364 to 194,143
GFF4409
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1 at 190.649 kb on - strand at 190.661 kb on - strand at 190.702 kb on + strand at 190.705 kb on + strand at 190.769 kb on + strand at 190.804 kb on + strand at 190.858 kb on + strand, within GFF4405 at 190.859 kb on - strand, within GFF4405 at 190.859 kb on - strand, within GFF4405 at 190.944 kb on - strand, within GFF4405 at 191.142 kb on - strand, within GFF4405 at 191.243 kb on + strand, within GFF4406 at 191.336 kb on + strand, within GFF4406 at 191.802 kb on - strand, within GFF4407 at 191.978 kb on + strand, within GFF4407 at 192.130 kb on + strand, within GFF4407 at 192.258 kb on + strand, within GFF4407 at 192.535 kb on + strand at 192.536 kb on - strand at 192.612 kb on - strand at 192.647 kb on - strand at 192.659 kb on - strand at 192.659 kb on - strand at 192.712 kb on - strand at 192.912 kb on + strand, within GFF4408 at 192.935 kb on - strand, within GFF4408 at 192.952 kb on + strand, within GFF4408 at 192.992 kb on - strand, within GFF4408 at 192.992 kb on - strand, within GFF4408 at 193.134 kb on + strand, within GFF4408 at 193.135 kb on - strand, within GFF4408 at 193.149 kb on + strand, within GFF4408 at 193.213 kb on - strand, within GFF4408 at 193.236 kb on + strand, within GFF4408 at 193.375 kb on + strand at 193.376 kb on - strand at 193.378 kb on + strand at 193.378 kb on + strand at 193.378 kb on + strand at 193.378 kb on + strand at 193.388 kb on - strand at 193.482 kb on + strand, within GFF4409 at 193.483 kb on - strand, within GFF4409
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 190,649 - +0.5 190,661 - +0.2 190,702 + +0.2 190,705 + -0.4 190,769 + -0.2 190,804 + -0.3 190,858 + GFF4405 0.21 -0.0 190,859 - GFF4405 0.21 -0.7 190,859 - GFF4405 0.21 +0.1 190,944 - GFF4405 0.42 +0.1 191,142 - GFF4405 0.89 +0.3 191,243 + GFF4406 0.12 -0.5 191,336 + GFF4406 0.33 +0.5 191,802 - GFF4407 0.18 -0.1 191,978 + GFF4407 0.37 -1.8 192,130 + GFF4407 0.54 -0.3 192,258 + GFF4407 0.68 +0.3 192,535 + -0.5 192,536 - -0.1 192,612 - -0.5 192,647 - -0.1 192,659 - +0.2 192,659 - +0.2 192,712 - +0.9 192,912 + GFF4408 0.31 -0.8 192,935 - GFF4408 0.35 -0.5 192,952 + GFF4408 0.37 +0.9 192,992 - GFF4408 0.43 +0.2 192,992 - GFF4408 0.43 +0.0 193,134 + GFF4408 0.64 -0.1 193,135 - GFF4408 0.64 -0.5 193,149 + GFF4408 0.66 -0.8 193,213 - GFF4408 0.76 -0.7 193,236 + GFF4408 0.79 +0.5 193,375 + -0.1 193,376 - -0.3 193,378 + +0.5 193,378 + -0.2 193,378 + +0.2 193,378 + -0.2 193,388 - +0.1 193,482 + GFF4409 0.15 -0.0 193,483 - GFF4409 0.15 -0.2
Or see this region's nucleotide sequence