Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4253 and GFF4254 are separated by 494 nucleotides GFF4254 and GFF4255 overlap by 4 nucleotides
GFF4253 - Type III restriction-modification system StyLTI enzyme res (EC 3.1.21.5), at 35,514 to 38,483
GFF4253
GFF4254 - putative Cytochrome bd2, subunit I, at 38,978 to 40,381
GFF4254
GFF4255 - putative Cytochrome bd2, subunit II, at 40,378 to 41,388
GFF4255
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -1
0
1 at 37.980 kb on + strand, within GFF4253 at 38.051 kb on + strand, within GFF4253 at 38.120 kb on - strand, within GFF4253 at 38.237 kb on + strand at 38.370 kb on - strand at 38.575 kb on - strand at 38.619 kb on + strand at 38.619 kb on + strand at 38.619 kb on + strand at 38.742 kb on - strand at 38.768 kb on + strand at 38.768 kb on + strand at 38.772 kb on + strand at 38.776 kb on - strand at 38.872 kb on + strand at 38.872 kb on + strand at 38.959 kb on + strand at 38.961 kb on + strand at 38.961 kb on + strand at 39.097 kb on - strand at 39.250 kb on + strand, within GFF4254 at 39.367 kb on + strand, within GFF4254 at 39.374 kb on - strand, within GFF4254 at 39.471 kb on + strand, within GFF4254 at 39.532 kb on + strand, within GFF4254 at 39.532 kb on + strand, within GFF4254 at 39.533 kb on - strand, within GFF4254 at 39.552 kb on + strand, within GFF4254 at 39.604 kb on + strand, within GFF4254 at 39.784 kb on + strand, within GFF4254 at 39.871 kb on + strand, within GFF4254 at 40.119 kb on + strand, within GFF4254 at 40.184 kb on - strand, within GFF4254 at 40.226 kb on + strand, within GFF4254 at 40.252 kb on + strand at 40.253 kb on - strand at 40.253 kb on - strand at 40.256 kb on + strand at 40.257 kb on - strand at 40.257 kb on - strand at 40.411 kb on - strand at 40.435 kb on + strand at 40.435 kb on + strand at 40.435 kb on + strand at 40.435 kb on + strand at 40.436 kb on - strand at 40.436 kb on - strand at 40.436 kb on - strand at 40.603 kb on + strand, within GFF4255 at 40.604 kb on - strand, within GFF4255 at 40.660 kb on - strand, within GFF4255 at 40.660 kb on - strand, within GFF4255 at 40.888 kb on + strand, within GFF4255 at 40.888 kb on + strand, within GFF4255 at 41.067 kb on - strand, within GFF4255 at 41.071 kb on + strand, within GFF4255 at 41.072 kb on - strand, within GFF4255 at 41.341 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 37,980 + GFF4253 0.83 -0.5 38,051 + GFF4253 0.85 +0.5 38,120 - GFF4253 0.88 +0.4 38,237 + +0.4 38,370 - -0.1 38,575 - +0.8 38,619 + -0.1 38,619 + +1.2 38,619 + -0.1 38,742 - -0.3 38,768 + +0.4 38,768 + -0.4 38,772 + +1.1 38,776 - +0.8 38,872 + +0.3 38,872 + -0.3 38,959 + -0.2 38,961 + +0.5 38,961 + -0.5 39,097 - +0.1 39,250 + GFF4254 0.19 +0.0 39,367 + GFF4254 0.28 +0.2 39,374 - GFF4254 0.28 +0.4 39,471 + GFF4254 0.35 -0.3 39,532 + GFF4254 0.39 +0.4 39,532 + GFF4254 0.39 -1.0 39,533 - GFF4254 0.40 -0.6 39,552 + GFF4254 0.41 -0.2 39,604 + GFF4254 0.45 -0.3 39,784 + GFF4254 0.57 +0.1 39,871 + GFF4254 0.64 +0.2 40,119 + GFF4254 0.81 +0.8 40,184 - GFF4254 0.86 -0.4 40,226 + GFF4254 0.89 -0.4 40,252 + -0.1 40,253 - +0.7 40,253 - -0.0 40,256 + +0.1 40,257 - +0.6 40,257 - +0.5 40,411 - -0.5 40,435 + +0.5 40,435 + +1.1 40,435 + -0.7 40,435 + -0.8 40,436 - -0.1 40,436 - +0.1 40,436 - +0.2 40,603 + GFF4255 0.22 -1.6 40,604 - GFF4255 0.22 -0.2 40,660 - GFF4255 0.28 -0.5 40,660 - GFF4255 0.28 +0.4 40,888 + GFF4255 0.50 +0.3 40,888 + GFF4255 0.50 -0.1 41,067 - GFF4255 0.68 -0.1 41,071 + GFF4255 0.69 +0.6 41,072 - GFF4255 0.69 -1.3 41,341 + -0.0
Or see this region's nucleotide sequence