Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4230 and GFF4231 are separated by 4 nucleotides GFF4231 and GFF4232 overlap by 17 nucleotides GFF4232 and GFF4233 are separated by 61 nucleotides
GFF4230 - Putative exported protein precursor, at 9,917 to 11,242
GFF4230
GFF4231 - outer membrane fimbrial usher protein, at 11,247 to 13,808
GFF4231
GFF4232 - Putative fimbrial chaperone, at 13,792 to 14,553
GFF4232
GFF4233 - Fimbrial protein precursor, at 14,615 to 15,151
GFF4233
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -2
-1
0
1 at 10.475 kb on - strand, within GFF4230 at 10.479 kb on + strand, within GFF4230 at 10.479 kb on + strand, within GFF4230 at 10.479 kb on + strand, within GFF4230 at 10.480 kb on - strand, within GFF4230 at 10.480 kb on - strand, within GFF4230 at 10.484 kb on - strand, within GFF4230 at 10.707 kb on + strand, within GFF4230 at 10.711 kb on + strand, within GFF4230 at 10.830 kb on + strand, within GFF4230 at 10.830 kb on + strand, within GFF4230 at 10.845 kb on - strand, within GFF4230 at 10.943 kb on + strand, within GFF4230 at 10.959 kb on + strand, within GFF4230 at 10.960 kb on - strand, within GFF4230 at 11.170 kb on + strand at 11.171 kb on - strand at 11.390 kb on - strand at 11.548 kb on + strand, within GFF4231 at 11.549 kb on - strand, within GFF4231 at 11.825 kb on + strand, within GFF4231 at 11.825 kb on + strand, within GFF4231 at 11.826 kb on - strand, within GFF4231 at 11.840 kb on - strand, within GFF4231 at 11.840 kb on - strand, within GFF4231 at 11.909 kb on + strand, within GFF4231 at 11.915 kb on + strand, within GFF4231 at 11.915 kb on + strand, within GFF4231 at 11.916 kb on - strand, within GFF4231 at 12.031 kb on + strand, within GFF4231 at 12.032 kb on - strand, within GFF4231 at 12.078 kb on - strand, within GFF4231 at 12.122 kb on + strand, within GFF4231 at 12.210 kb on + strand, within GFF4231 at 12.212 kb on + strand, within GFF4231 at 12.212 kb on + strand, within GFF4231 at 12.213 kb on - strand, within GFF4231 at 12.230 kb on + strand, within GFF4231 at 12.230 kb on + strand, within GFF4231 at 12.231 kb on - strand, within GFF4231 at 12.231 kb on - strand, within GFF4231 at 12.231 kb on - strand, within GFF4231 at 12.231 kb on - strand, within GFF4231 at 12.266 kb on + strand, within GFF4231 at 12.272 kb on - strand, within GFF4231 at 12.272 kb on - strand, within GFF4231 at 12.465 kb on + strand, within GFF4231 at 12.718 kb on + strand, within GFF4231 at 12.719 kb on - strand, within GFF4231 at 12.794 kb on - strand, within GFF4231 at 12.859 kb on + strand, within GFF4231 at 13.034 kb on + strand, within GFF4231 at 13.078 kb on + strand, within GFF4231 at 13.078 kb on + strand, within GFF4231 at 13.078 kb on + strand, within GFF4231 at 13.079 kb on - strand, within GFF4231 at 13.079 kb on - strand, within GFF4231 at 13.100 kb on + strand, within GFF4231 at 13.107 kb on - strand, within GFF4231 at 13.145 kb on + strand, within GFF4231 at 13.149 kb on - strand, within GFF4231 at 13.149 kb on - strand, within GFF4231 at 13.150 kb on + strand, within GFF4231 at 13.254 kb on + strand, within GFF4231 at 13.259 kb on - strand, within GFF4231 at 13.259 kb on - strand, within GFF4231 at 13.362 kb on - strand, within GFF4231 at 13.578 kb on - strand at 13.589 kb on + strand at 13.589 kb on + strand at 13.622 kb on - strand at 13.664 kb on + strand at 13.720 kb on + strand at 13.756 kb on - strand at 13.767 kb on + strand at 13.768 kb on - strand at 13.811 kb on + strand at 13.823 kb on - strand at 13.985 kb on - strand, within GFF4232 at 14.017 kb on - strand, within GFF4232 at 14.616 kb on + strand at 14.617 kb on - strand at 14.697 kb on + strand, within GFF4233
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 10,475 - GFF4230 0.42 +0.8 10,479 + GFF4230 0.42 -0.2 10,479 + GFF4230 0.42 -0.0 10,479 + GFF4230 0.42 +0.4 10,480 - GFF4230 0.42 +0.0 10,480 - GFF4230 0.42 -0.5 10,484 - GFF4230 0.43 -0.3 10,707 + GFF4230 0.60 +0.8 10,711 + GFF4230 0.60 +0.6 10,830 + GFF4230 0.69 -0.2 10,830 + GFF4230 0.69 -0.0 10,845 - GFF4230 0.70 -2.0 10,943 + GFF4230 0.77 -0.5 10,959 + GFF4230 0.79 +0.2 10,960 - GFF4230 0.79 -0.1 11,170 + -0.4 11,171 - +0.1 11,390 - -1.2 11,548 + GFF4231 0.12 +0.0 11,549 - GFF4231 0.12 +0.2 11,825 + GFF4231 0.23 -0.2 11,825 + GFF4231 0.23 +0.8 11,826 - GFF4231 0.23 +0.1 11,840 - GFF4231 0.23 +0.6 11,840 - GFF4231 0.23 +0.3 11,909 + GFF4231 0.26 -0.4 11,915 + GFF4231 0.26 +0.6 11,915 + GFF4231 0.26 -0.1 11,916 - GFF4231 0.26 +0.3 12,031 + GFF4231 0.31 +1.0 12,032 - GFF4231 0.31 -0.1 12,078 - GFF4231 0.32 -0.0 12,122 + GFF4231 0.34 +1.1 12,210 + GFF4231 0.38 +0.1 12,212 + GFF4231 0.38 -0.2 12,212 + GFF4231 0.38 -0.0 12,213 - GFF4231 0.38 +0.3 12,230 + GFF4231 0.38 +0.1 12,230 + GFF4231 0.38 +0.2 12,231 - GFF4231 0.38 -0.1 12,231 - GFF4231 0.38 +0.2 12,231 - GFF4231 0.38 +0.7 12,231 - GFF4231 0.38 -0.1 12,266 + GFF4231 0.40 -1.1 12,272 - GFF4231 0.40 +0.4 12,272 - GFF4231 0.40 +0.1 12,465 + GFF4231 0.48 +0.4 12,718 + GFF4231 0.57 +0.1 12,719 - GFF4231 0.57 +0.6 12,794 - GFF4231 0.60 +0.2 12,859 + GFF4231 0.63 +0.4 13,034 + GFF4231 0.70 +0.8 13,078 + GFF4231 0.71 +0.1 13,078 + GFF4231 0.71 +1.0 13,078 + GFF4231 0.71 +0.8 13,079 - GFF4231 0.72 +0.4 13,079 - GFF4231 0.72 -0.3 13,100 + GFF4231 0.72 +0.2 13,107 - GFF4231 0.73 +0.5 13,145 + GFF4231 0.74 -0.4 13,149 - GFF4231 0.74 -0.2 13,149 - GFF4231 0.74 -1.6 13,150 + GFF4231 0.74 -0.5 13,254 + GFF4231 0.78 +0.5 13,259 - GFF4231 0.79 -0.5 13,259 - GFF4231 0.79 -0.5 13,362 - GFF4231 0.83 +0.3 13,578 - -0.3 13,589 + +0.3 13,589 + -2.6 13,622 - +0.4 13,664 + +0.5 13,720 + +0.2 13,756 - +0.9 13,767 + +0.7 13,768 - -0.5 13,811 + -0.3 13,823 - -0.1 13,985 - GFF4232 0.25 -0.6 14,017 - GFF4232 0.30 -0.1 14,616 + -0.3 14,617 - +0.3 14,697 + GFF4233 0.15 +0.3
Or see this region's nucleotide sequence