Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4135 and GFF4136 are separated by 294 nucleotides GFF4136 and GFF4137 are separated by 10 nucleotides GFF4137 and GFF4138 overlap by 4 nucleotides
GFF4135 - FIG01047465: hypothetical protein, at 17,578 to 18,780
GFF4135
GFF4136 - Oxidoreductase, Gfo/Idh/MocA family, at 19,075 to 20,088
GFF4136
GFF4137 - PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69), at 20,099 to 21,079
GFF4137
GFF4138 - PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69), at 21,076 to 21,450
GFF4138
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1 at 18.081 kb on + strand, within GFF4135 at 18.901 kb on - strand at 18.977 kb on + strand at 19.016 kb on + strand at 19.256 kb on + strand, within GFF4136 at 19.257 kb on - strand, within GFF4136 at 19.328 kb on + strand, within GFF4136 at 19.328 kb on + strand, within GFF4136 at 19.328 kb on + strand, within GFF4136 at 19.329 kb on - strand, within GFF4136 at 19.329 kb on - strand, within GFF4136 at 19.642 kb on - strand, within GFF4136 at 19.700 kb on - strand, within GFF4136 at 19.787 kb on - strand, within GFF4136 at 19.931 kb on + strand, within GFF4136 at 20.106 kb on - strand at 20.662 kb on + strand, within GFF4137 at 20.663 kb on - strand, within GFF4137 at 20.742 kb on - strand, within GFF4137 at 20.760 kb on + strand, within GFF4137 at 20.760 kb on + strand, within GFF4137 at 20.760 kb on + strand, within GFF4137 at 20.761 kb on - strand, within GFF4137 at 20.761 kb on - strand, within GFF4137 at 20.875 kb on + strand, within GFF4137 at 21.038 kb on - strand at 21.064 kb on + strand at 21.065 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 18,081 + GFF4135 0.42 +0.3 18,901 - +0.2 18,977 + -0.3 19,016 + -0.1 19,256 + GFF4136 0.18 +0.2 19,257 - GFF4136 0.18 -0.0 19,328 + GFF4136 0.25 +0.4 19,328 + GFF4136 0.25 +0.1 19,328 + GFF4136 0.25 +0.2 19,329 - GFF4136 0.25 -0.4 19,329 - GFF4136 0.25 +0.3 19,642 - GFF4136 0.56 +0.7 19,700 - GFF4136 0.62 +0.4 19,787 - GFF4136 0.70 +0.3 19,931 + GFF4136 0.84 -0.1 20,106 - +0.2 20,662 + GFF4137 0.57 +0.6 20,663 - GFF4137 0.57 +0.2 20,742 - GFF4137 0.66 +0.0 20,760 + GFF4137 0.67 -0.4 20,760 + GFF4137 0.67 +0.2 20,760 + GFF4137 0.67 -0.1 20,761 - GFF4137 0.67 +0.4 20,761 - GFF4137 0.67 +1.2 20,875 + GFF4137 0.79 +0.1 21,038 - +0.4 21,064 + -0.0 21,065 - -0.4
Or see this region's nucleotide sequence