Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4070 and GFF4071 are separated by 26 nucleotides GFF4071 and GFF4072 are separated by 396 nucleotides GFF4072 and GFF4073 are separated by 23 nucleotides GFF4073 and GFF4074 are separated by 18 nucleotides
GFF4070 - Probable secreted protein, at 33,955 to 34,341
GFF4070
GFF4071 - FIG074102: hypothetical protein, at 34,368 to 34,886
GFF4071
GFF4072 - VgrG protein, at 35,283 to 37,472
GFF4072
GFF4073 - FIG074102: hypothetical protein, at 37,496 to 37,942
GFF4073
GFF4074 - ClpB protein, at 37,961 to 42,055
GFF4074
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -1
0
1 at 34.319 kb on + strand at 34.319 kb on + strand at 34.319 kb on + strand at 34.351 kb on + strand at 34.428 kb on - strand, within GFF4071 at 34.508 kb on + strand, within GFF4071 at 34.650 kb on - strand, within GFF4071 at 34.719 kb on + strand, within GFF4071 at 35.441 kb on - strand at 35.651 kb on - strand, within GFF4072 at 35.674 kb on + strand, within GFF4072 at 35.680 kb on + strand, within GFF4072 at 35.681 kb on - strand, within GFF4072 at 35.801 kb on + strand, within GFF4072 at 35.856 kb on - strand, within GFF4072 at 35.860 kb on - strand, within GFF4072 at 35.860 kb on - strand, within GFF4072 at 35.860 kb on - strand, within GFF4072 at 35.911 kb on - strand, within GFF4072 at 36.030 kb on + strand, within GFF4072 at 36.030 kb on + strand, within GFF4072 at 36.084 kb on + strand, within GFF4072 at 36.345 kb on + strand, within GFF4072 at 36.372 kb on + strand, within GFF4072 at 36.373 kb on - strand, within GFF4072 at 36.599 kb on + strand, within GFF4072 at 36.599 kb on + strand, within GFF4072 at 36.739 kb on - strand, within GFF4072 at 36.929 kb on + strand, within GFF4072 at 36.933 kb on + strand, within GFF4072 at 36.933 kb on + strand, within GFF4072 at 36.933 kb on + strand, within GFF4072 at 37.009 kb on - strand, within GFF4072 at 37.318 kb on + strand at 37.318 kb on + strand at 37.363 kb on + strand at 37.363 kb on + strand at 37.508 kb on + strand at 37.613 kb on - strand, within GFF4073 at 37.655 kb on + strand, within GFF4073 at 37.655 kb on + strand, within GFF4073 at 37.802 kb on + strand, within GFF4073 at 37.965 kb on - strand at 37.994 kb on + strand at 38.472 kb on + strand, within GFF4074
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 34,319 + -0.6 34,319 + +0.2 34,319 + -0.3 34,351 + -0.3 34,428 - GFF4071 0.12 -0.3 34,508 + GFF4071 0.27 +0.8 34,650 - GFF4071 0.54 +0.7 34,719 + GFF4071 0.68 +0.3 35,441 - -0.3 35,651 - GFF4072 0.17 +0.3 35,674 + GFF4072 0.18 +0.5 35,680 + GFF4072 0.18 -0.2 35,681 - GFF4072 0.18 -1.4 35,801 + GFF4072 0.24 +0.1 35,856 - GFF4072 0.26 -0.3 35,860 - GFF4072 0.26 +1.1 35,860 - GFF4072 0.26 +0.8 35,860 - GFF4072 0.26 +0.1 35,911 - GFF4072 0.29 -0.2 36,030 + GFF4072 0.34 -0.1 36,030 + GFF4072 0.34 -1.2 36,084 + GFF4072 0.37 -1.5 36,345 + GFF4072 0.48 +0.0 36,372 + GFF4072 0.50 +1.3 36,373 - GFF4072 0.50 +0.6 36,599 + GFF4072 0.60 -0.1 36,599 + GFF4072 0.60 -1.0 36,739 - GFF4072 0.66 -0.6 36,929 + GFF4072 0.75 +0.1 36,933 + GFF4072 0.75 +0.3 36,933 + GFF4072 0.75 +0.0 36,933 + GFF4072 0.75 +0.1 37,009 - GFF4072 0.79 -0.0 37,318 + -1.1 37,318 + +0.1 37,363 + -0.1 37,363 + +0.8 37,508 + -0.5 37,613 - GFF4073 0.26 -0.4 37,655 + GFF4073 0.36 +0.1 37,655 + GFF4073 0.36 -0.3 37,802 + GFF4073 0.68 -0.4 37,965 - -0.4 37,994 + +0.0 38,472 + GFF4074 0.12 +0.4
Or see this region's nucleotide sequence