Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3905 and GFF3906 are separated by 80 nucleotides GFF3906 and GFF3907 overlap by 7 nucleotides GFF3907 and GFF3908 overlap by 19 nucleotides
GFF3905 - regulator of length of O-antigen component of lipopolysaccharide chains, at 187,038 to 188,021
GFF3905
GFF3906 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 188,102 to 188,713
GFF3906
GFF3907 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 188,707 to 189,483
GFF3907
GFF3908 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16), at 189,465 to 190,202
GFF3908
Position (kb) 188
189 Strain fitness (log2 ratio) -1
0
1 at 187.220 kb on + strand, within GFF3905 at 187.254 kb on + strand, within GFF3905 at 187.257 kb on - strand, within GFF3905 at 187.335 kb on - strand, within GFF3905 at 187.335 kb on - strand, within GFF3905 at 187.443 kb on + strand, within GFF3905 at 187.488 kb on + strand, within GFF3905 at 187.544 kb on + strand, within GFF3905 at 187.628 kb on + strand, within GFF3905 at 187.629 kb on - strand, within GFF3905 at 187.872 kb on + strand, within GFF3905 at 187.942 kb on + strand at 188.001 kb on + strand at 188.002 kb on - strand at 188.279 kb on - strand, within GFF3906 at 188.279 kb on - strand, within GFF3906 at 188.279 kb on - strand, within GFF3906 at 188.313 kb on + strand, within GFF3906 at 188.462 kb on - strand, within GFF3906 at 188.605 kb on + strand, within GFF3906 at 188.607 kb on + strand, within GFF3906 at 188.608 kb on - strand, within GFF3906 at 188.621 kb on + strand, within GFF3906 at 189.111 kb on + strand, within GFF3907 at 189.111 kb on + strand, within GFF3907 at 189.111 kb on + strand, within GFF3907 at 189.112 kb on - strand, within GFF3907 at 189.467 kb on - strand at 189.700 kb on - strand, within GFF3908 at 189.700 kb on - strand, within GFF3908 at 189.700 kb on - strand, within GFF3908
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 187,220 + GFF3905 0.18 -0.0 187,254 + GFF3905 0.22 -0.0 187,257 - GFF3905 0.22 -0.6 187,335 - GFF3905 0.30 -0.0 187,335 - GFF3905 0.30 -0.1 187,443 + GFF3905 0.41 -0.2 187,488 + GFF3905 0.46 -0.3 187,544 + GFF3905 0.51 -1.3 187,628 + GFF3905 0.60 -0.1 187,629 - GFF3905 0.60 +0.8 187,872 + GFF3905 0.85 -0.6 187,942 + -0.6 188,001 + -0.8 188,002 - +0.2 188,279 - GFF3906 0.29 -0.9 188,279 - GFF3906 0.29 +0.1 188,279 - GFF3906 0.29 -0.3 188,313 + GFF3906 0.34 -0.2 188,462 - GFF3906 0.59 +0.1 188,605 + GFF3906 0.82 -0.8 188,607 + GFF3906 0.83 -1.1 188,608 - GFF3906 0.83 -0.3 188,621 + GFF3906 0.85 -0.1 189,111 + GFF3907 0.52 -0.4 189,111 + GFF3907 0.52 +0.2 189,111 + GFF3907 0.52 +0.5 189,112 - GFF3907 0.52 -0.5 189,467 - -1.5 189,700 - GFF3908 0.32 +0.5 189,700 - GFF3908 0.32 -1.2 189,700 - GFF3908 0.32 +0.1
Or see this region's nucleotide sequence