Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3904

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
184,773	+		GFF3903	0.49	-0.5
184,790	+		GFF3903	0.50	+0.1
184,947	+		GFF3903	0.61	+0.3
185,082	+		GFF3903	0.71	-1.4
185,082	+		GFF3903	0.71	+1.5
185,240	+		GFF3903	0.82	+0.9
185,367	+				-0.0
185,900	-		GFF3904	0.15	-1.8
186,247	-		GFF3904	0.44	-0.8
186,336	-		GFF3904	0.52	+0.3
186,377	+		GFF3904	0.56	+0.6
186,377	+		GFF3904	0.56	-0.5
186,377	+		GFF3904	0.56	-1.2
186,454	+		GFF3904	0.62	-0.8
186,542	-		GFF3904	0.70	-0.5
186,732	-		GFF3904	0.86	-1.5
186,732	-		GFF3904	0.86	+0.3
186,754	+		GFF3904	0.88	-0.3
186,763	+		GFF3904	0.89	-0.9
186,763	+		GFF3904	0.89	+0.3
186,990	+				+0.0
186,996	+				-0.5
187,028	+				-0.1
187,037	+				-0.3
187,052	+				-0.3
187,220	+		GFF3905	0.18	-0.0
187,254	+		GFF3905	0.22	-0.0
187,257	-		GFF3905	0.22	-0.6
187,335	-		GFF3905	0.30	-0.0
187,335	-		GFF3905	0.30	-0.1
187,443	+		GFF3905	0.41	-0.2
187,488	+		GFF3905	0.46	-0.3
187,544	+		GFF3905	0.51	-1.3
187,628	+		GFF3905	0.60	-0.1
187,629	-		GFF3905	0.60	+0.8
187,872	+		GFF3905	0.85	-0.6