Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3884

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
161,266	-		GFF3883	0.27	+0.2
161,368	-		GFF3883	0.35	+0.4
161,577	+		GFF3883	0.52	-0.5
161,765	+		GFF3883	0.66	-0.4
161,818	-		GFF3883	0.71	-0.2
161,973	+		GFF3883	0.83	-0.2
161,982	-		GFF3883	0.83	-0.1
162,007	+		GFF3883	0.85	-0.3
162,007	+		GFF3883	0.85	-0.1
162,266	-				-0.2
162,322	+		GFF3884	0.11	+0.0
162,322	+		GFF3884	0.11	-0.1
162,345	-		GFF3884	0.13	-0.7
162,422	-		GFF3884	0.19	+0.8
162,557	-		GFF3884	0.30	-0.7
162,557	-		GFF3884	0.30	-1.0
162,653	-		GFF3884	0.38	-0.1
162,658	+		GFF3884	0.38	-0.3
163,139	-		GFF3884	0.78	+0.1
163,185	+		GFF3884	0.81	-0.4
163,189	+		GFF3884	0.82	+0.8
163,409	+				+0.8
163,421	+				+0.4
163,809	-		GFF3885	0.28	-0.2
163,996	+		GFF3885	0.41	-0.1
164,075	+		GFF3885	0.47	+0.0
164,082	-		GFF3885	0.47	-0.2
164,134	-		GFF3885	0.51	-0.1
164,146	-		GFF3885	0.52	+0.6
164,410	-		GFF3885	0.70	-0.8