Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3791

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
60,059	+		GFF3790	0.15	-0.2
60,059	+		GFF3790	0.15	-0.4
60,186	-		GFF3790	0.28	+1.8
60,457	-		GFF3790	0.55	-0.0
60,457	-		GFF3790	0.55	+1.6
60,469	-		GFF3790	0.56	-0.4
60,510	-		GFF3790	0.60	+0.7
60,644	-		GFF3790	0.73	-0.8
60,659	+		GFF3790	0.75	-1.1
60,689	+		GFF3790	0.78	+0.0
60,690	-		GFF3790	0.78	-0.7
60,690	-		GFF3790	0.78	-0.1
60,693	+		GFF3790	0.78	-0.4
60,693	+		GFF3790	0.78	+0.0
60,693	+		GFF3790	0.78	+0.1
60,817	-				-0.2
60,926	+				-0.1
60,938	+				+0.1
61,161	+		GFF3791	0.14	+0.5
61,174	-		GFF3791	0.15	-0.9
61,174	-		GFF3791	0.15	-0.5
61,259	-		GFF3791	0.22	+0.2
61,289	+		GFF3791	0.24	+0.3
61,318	-		GFF3791	0.27	-1.1
61,347	-		GFF3791	0.29	-0.9
61,362	+		GFF3791	0.30	+0.6
61,370	-		GFF3791	0.31	-0.5
61,389	-		GFF3791	0.32	+0.3
61,501	+		GFF3791	0.41	+0.1
61,604	-		GFF3791	0.50	-1.2
61,681	+		GFF3791	0.56	+0.2
61,778	+		GFF3791	0.64	-0.2
62,186	-				+0.8
62,665	+		GFF3792	0.36	+0.5
62,687	-		GFF3792	0.38	-0.3
63,022	+		GFF3792	0.65	-0.0
63,199	-		GFF3792	0.79	-0.1